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igvteam / igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
https://igv.org
MIT License
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clicable link in bedfile in gffTags? #1596

Open duartemolha opened 2 days ago

duartemolha commented 2 days ago

Hi .. I was wondering if there is a way of adding a bedfile entry with actionable link to navigate to another feature /genomic coordinate in the opened IGV session

something like:

gffTags

chr1 100 200 Name=Target1;link=http://localhost:60151/goto?locus=chr2:100-200

many thanks

lbergelson commented 2 days ago

That's an interesting idea. I'm not sure I like having to edit your data to include a link though. Maybe we could generally identify loci in the tooltip text and make them clickable.

duartemolha commented 2 days ago

Yes... That would be ideal... I just tried with the link because I know I can get igv to navigate to a loci using these sort of links... So.i tried embedding it on the tags :)

Having an actionable link detection on the tool tip that automatically converts a chrN:start-end into a navigable link would be the best

On Tue, 8 Oct 2024, 16:58 Louis Bergelson, @.***> wrote:

That's an interesting idea. I'm not sure I like having to edit your data to include a link though. Maybe we could generally identify loci in the tooltip text and make them clickable.

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