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igvteam / igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
https://igv.org
MIT License
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WARNING: Unknown module: jide.common specified to --add-exports #1611

Open kamraanchal opened 2 weeks ago

kamraanchal commented 2 weeks ago

Running **igv version 2.18.4 with JAVA** gives the below warnings on a CentOS linux system

]$ igv.sh --help echo Using bundled JDK. openjdk version "17.0.9" 2023-10-17 OpenJDK Runtime Environment Temurin-17.0.9+9 (build 17.0.9+9) OpenJDK 64-Bit Server VM Temurin-17.0.9+9 (build 17.0.9+9, mixed mode, sharing) WARNING: Unknown module: jide.common specified to --add-exports WARNING: Unknown module: jide.common specified to --add-exports WARNING: Unknown module: jide.common specified to --add-exports WARNING: Unknown module: jide.common specified to --add-exports WARNING: Unknown module: jide.common specified to --add-exports WARNING: package com.sun.java.swing.plaf.windows not in java.desktop WARNING: package sun.awt.windows not in java.desktop WARNING: Unknown module: jide.common specified to --add-exports WARNING: Unknown module: jide.common specified to --add-exports

Can someone suggest how to get rid of these warnings ?

jrobinso commented 2 weeks ago

Hi, I don't think you can get rid of those warnings.

kamraanchal commented 2 weeks ago

@jrobinso How can i get rid for these warnings . Any suggestions ?

jrobinso commented 2 weeks ago

@kamraanchal I've already replied, did you miss it? No, I don't have any suggestion, AFAIK you can't get rid of them. What issue are they causing?

kamraanchal commented 2 weeks ago

@jrobinso The issue is that our customers are asking us the reason for these warnings. Also, I did not miss your reply. As your reply said that Hi, I don't think you can't get rid of those warnings. To me it meant that one can get rid of those warnings.

jrobinso commented 2 weeks ago

I see, sorry about that. Please tell your customers they can ignore these warnings. They will have no impact no IGV's functionality.

kamraanchal commented 2 weeks ago

@jrobinso Thank you for the information. We will communicate the same.

fthommen commented 2 weeks ago

@jrobinso 🤔 When I install a tool according to its installation instructions and use it according to its usage instructions and it starts right away with nine warnings, then I'd see this either as a (although lesser) bug in the software, the installation instructions or the usage instructions. Also it would be interesting to know from the developer side, what the reason for these warnings is and why we can't get rid of them (I am also involved in the maintenance of the affected software installation mentioned by the OP)

jrobinso commented 2 weeks ago

@fthommen fair enough, consider it a lesser bug then. I will reopen it but can't give any ETAs at this time.