Combine pre-training files as well as post-training files of EEG data

[ihgumilar]

Right now it is in separate files

[ihgumilar]

use combine_fif_files.py Please refer to this

[ihgumilar]

c7f409b combine pre-averted data. There is something wrong in combining data for odd and even subject.

[ihgumilar]

eefc499 Fixed combining pre-averted files (fixing the above comment) and Add script to combine post averted files

• Fixed odd subject with Right-Left combination.
• Even subject with Left - Right combination.
• Change file naming for odd and even subject according to their hands order.
• Added script for combining post-averted files

[ihgumilar]

ccbdfde86736a869b205665900115152dd23e514 Combine all raw data (jupyter notebook)

 * Combine all baseline data : It has only pre & post averted.
 * Combine all experimental data : pre & post for all eye conditions (averted, direct, & natural).
 * Fix S0 to S for subject number which is bigger than 9, eg. S10 instead of S010.
 * ToDo :      
       - [ ]  Change the number of looping to the total number of files, currently is 16.     
       - [ ]  Change to 30 later on (if there are 15 pairs)

[ihgumilar]

d97426c1e4378fd943dbf7a17b23f375155997b2 needs to be fixed :

• [x] Change hard coded (directory path) to soft coded as it is used in combining baseline data of eye tracker 201ad992f09ccbd45e11567f7c89432e680e4471

[ihgumilar]

a021d21 Change from hard coded to soft coded

[ihgumilar]

It seems there is something wrong in combining averted_pre (no.11) and averted_post (no.12)

Do this. Check other conditions

# Equalise epoch
mne.epochs.equalize_epoch_counts([epo1_averted, epo2_averted])

# Combined epoch
combined_epoch = mne.concatenate_epochs([epo1_averted, epo2_averted])

The issue seems with the way we save..after concatenating epoched data, it should be saved this way -epo.fifor -epo.fif.gz

[ihgumilar]

There is something wrong with the looping. Just use the old script from hyperscanning2 under EEG-pre-processing branch there is **combine_files_fif.py** Just use that file and use the looping in it. Looping with step 2

Forget about **combine_files_fif.ipynb** and delete later

[ihgumilar]

b8f675e Fixed combine each pre & post data

• Fixed the number of points from subject 10 and onwards
• Previously, from subject 10 and onwards, the time points are too many. It is reflected on deleted epoch indices during analysis
• Now the time points are around 120 seconds, when we epoch 1 second, it will be 120 epochs
• This is for experimental data only
• ToDo : Need to add code for combining baseline data (averted only)

[ihgumilar]

a923304 Added coded to combine baseline data

• It combines each pre & post data for both experimental and baseline data

18136a51a8845a076b3bc573f7f28063183bdf49 in main branch

(NOTE) For processing all data, please change the end variable. So far, it is only dedicated for processing 16 files

[ihgumilar]

497cdf763835c09c2ca9b805e88343ab488e0e52 Fixed file order and naming even subjects in (EEG-pre-processing branch)

• Previously, the order of files to be combined similar with odd subject
• Similarly, for file naming, it was similar to odd subjects.
• For example, odd subject : pre = right_left, post = left_right even subject : pre = left_right , post = right_left

9aa1e7a the same file but in main branch

[ihgumilar]

6848b536e7d79ddc2a99b0eff795e20f86fd1790 use this that counts 26 files of csv

[ihgumilar]

432da5e use this, it will automatically read the number of raw csv files. It is soft coded instead of hard coded as you can see the above code