Would this follow the alignment style of annotating columns (as e.g. the #=GC and #=GR fields in Stockholm format), or the genome browser style of having features tagged to an individual sequence?
The latter is better for stable annotations, but then the features are interrupted by gaps in the alignment. The former is better for alignment analyses (e.g. column entropy)
Would this follow the alignment style of annotating columns (as e.g. the #=GC and #=GR fields in Stockholm format), or the genome browser style of having features tagged to an individual sequence?
The latter is better for stable annotations, but then the features are interrupted by gaps in the alignment. The former is better for alignment analyses (e.g. column entropy)