issues
search
ihmwg
/
IHMCIF
📖 mmCIF support for hybrid/integrative models
https://pdb-dev.wwpdb.org
Creative Commons Zero v1.0 Universal
21
stars
3
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add BMRbig to the `_ihm_dataset_related_db_reference.db_name`
#110
brindakv
opened
3 weeks ago
0
Update all PDB-Dev references to PDB-IHM
#109
brindakv
opened
1 month ago
1
Remediation of jPOST IDs with ProteomeExchange
#108
aozalevsky
opened
2 months ago
0
missing link between `_ihm_sphere_obj_site` and `_ihm_model_representation_details`
#107
aozalevsky
opened
3 months ago
3
Use cases of `multi-residue` `_ihm_model_representation_details.model_granularity`
#106
aozalevsky
opened
3 months ago
0
Rename `ihm_ensemble_info` category
#105
brindakv
opened
3 months ago
3
Updates to support remediation of PDB-Dev entries before unification with PDB
#104
brindakv
closed
2 months ago
0
Expand ihm_cross_link_list table
#103
aozalevsky
opened
6 months ago
0
Update CX-MS to Crosslinking-MS in the dictionary
#102
brindakv
opened
6 months ago
0
Address redundant parent-child relationships in atom_site category
#101
brindakv
opened
7 months ago
0
Add "starting model" to the enumeration list for `_ihm_dataset_group.application`
#100
brindakv
closed
5 months ago
0
Review parent-child relationships in ihm_starting_model_coord
#99
brindakv
opened
7 months ago
0
Allow for segments of branched entities to be defined and used in related categories
#98
brindakv
opened
8 months ago
0
Allow for optional asym_id in tables where information can be the same across different instances of the same entity
#97
brindakv
opened
8 months ago
0
Updated descriptions of model related categories
#96
brindakv
opened
8 months ago
0
Extend IHMCIF to add model_id to existing PDBx/mmCIF tables
#95
brindakv
opened
8 months ago
0
Item type for `_ihm_dataset_related_db_reference.accession_code`
#94
brindakv
opened
9 months ago
0
Reorganize and rename dictionary
#93
brindakv
closed
9 months ago
0
Dictionary update for Input dataset groups - Add modeling option for application
#92
monica81567
opened
11 months ago
0
Depositor-reported cross-linking satisfaction rates
#91
aozalevsky
opened
1 year ago
0
Add generic restraints
#90
aozalevsky
opened
1 year ago
0
Kinetic schemes
#89
brindakv
closed
10 months ago
1
the data category 'ihm_ordered_ensemble' is misleading
#88
jaredsagendorf
opened
1 year ago
0
Add AlphaFoldDB to the list of databases
#87
aozalevsky
closed
1 year ago
3
Consider making _ihm_ensemble_info.model_group_id mandatory
#86
brindakv
opened
1 year ago
0
Add "Ensemble FRET data" as enumeration value to _ihm_dataset_list.data_type
#85
CAHanke
closed
1 year ago
1
Identify whether ensembles are structurally aligned
#84
brindakv
closed
1 year ago
2
Identify models belonging to a collection
#83
brindakv
closed
1 year ago
7
Allow for templates from AlphaFold log file to be included in the mmCIF file
#82
brindakv
closed
1 year ago
1
Extend _ihm_ensemble_info.ensemble_clustering_method enumeration
#81
benmwebb
closed
1 year ago
1
Add support for ensemble subsamples
#80
benmwebb
closed
4 years ago
1
_ihm_predicted_contact_restraint example in v1.0
#79
arose
closed
5 years ago
1
Referencing multiple sources/datasets for ihm_derived_distance_restaints
#78
mtrellet
opened
5 years ago
1
Is model representation required to be a strict subset of the model's assembly?
#77
benmwebb
closed
5 years ago
1
Include multiple dictionaries in audit_conform
#76
brindakv
opened
5 years ago
0
What are the valid mappings between ihm_model_representation and atom/sphere_obj site?
#75
benmwebb
closed
5 years ago
1
Add standard colors and orientations
#74
tomgoddard
opened
5 years ago
1
Add pseudo-atoms support to define restraints
#73
mtrellet
closed
4 years ago
4
Create definitions for restraints derived from hydroxyl radical footprinting
#72
brindakv
closed
5 years ago
1
Support DSSO crosslinkers
#71
benmwebb
closed
6 years ago
1
Atomic multi-state structures break some of the struct_group categories in the PDBx/mmCIF dictionary
#70
brindakv
opened
6 years ago
4
Validate external file references
#69
tomgoddard
opened
6 years ago
0
PDBDEV_00000001.cif has incorrect ihm_external_files data
#68
tomgoddard
closed
6 years ago
2
PDBDev should host all data files for fast access
#67
tomgoddard
opened
6 years ago
0
Allow for "conditional" restraints
#66
benmwebb
opened
6 years ago
1
Question: Are (or will) non-polymer coarse objects allowed?
#65
arose
opened
6 years ago
1
Annotate vector and matrix fields as such in _item_sub_category.id
#64
arose
closed
6 years ago
2
PDBDEV_00000002.cif entity RPL3 with asym_id "."
#63
tomgoddard
closed
6 years ago
1
Example file with gaussian objects
#62
arose
opened
6 years ago
7
Coarse-grained representations of helices as cylinders
#61
brindakv
opened
6 years ago
0
Next