If a category definition (_category.id) is found in the dictionary after a data item in that category (_item.name) then that data item is ignored (or rather, a new Category object is created which overwrites the temporary one created when the data item was encountered). One example in PDBx is entity_src_gen, which is defined after entity_src_gen.entity_id. We can fix that by updating rather than overwriting the existing Category object. See also ihmwg/python-modelcif#30.
If a category definition (
_category.id) is found in the dictionary after a data item in that category (_item.name) then that data item is ignored (or rather, a newCategoryobject is created which overwrites the temporary one created when the data item was encountered). One example in PDBx isentity_src_gen, which is defined afterentity_src_gen.entity_id. We can fix that by updating rather than overwriting the existingCategoryobject. See also ihmwg/python-modelcif#30.