Housekeeping for 2024-W13

khaeru commented 3 months ago

Adapt to genno 1.25.
Improve documentation cross-references using sphinx extensions provided by genno 1.26.
Bump ruff, mypy versions and remove outdated typing exclusions.
- Adjust code to pass type checks with pandas-stubs.
Handle package.__version__ = None in show_versions().
Add dependabot config for GitHub Actions used in workflows.
Bump pre-commit action version to suppress GHA warnings.

How to review

Read the diff and note that the CI checks all pass.
View the preview build of the documentation, particularly the reporting page.

PR checklist

[x] Continuous integration checks all ✅
[x] Add or expand tests; coverage checks both ✅
[x] Add, expand, or update documentation.
~Update release notes.~ No change in functionality.

codecov[bot] commented 3 months ago

Codecov Report

All modified and coverable lines are covered by tests :white_check_mark:

Project coverage is 98.9%. Comparing base (d202e01) to head (0390fac).

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #524 +/- ## ===================================== Coverage 98.9% 98.9% ===================================== Files 44 44 Lines 4795 4804 +9 ===================================== + Hits 4743 4754 +11 + Misses 52 50 -2 ``` | [Files](https://app.codecov.io/gh/iiasa/ixmp/pull/524?dropdown=coverage&src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=iiasa) | Coverage Δ | | |---|---|---| | [ixmp/backend/\_\_init\_\_.py](https://app.codecov.io/gh/iiasa/ixmp/pull/524?src=pr&el=tree&filepath=ixmp%2Fbackend%2F__init__.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=iiasa#diff-aXhtcC9iYWNrZW5kL19faW5pdF9fLnB5) | `100.0% <ø> (ø)` | | | [ixmp/backend/io.py](https://app.codecov.io/gh/iiasa/ixmp/pull/524?src=pr&el=tree&filepath=ixmp%2Fbackend%2Fio.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=iiasa#diff-aXhtcC9iYWNrZW5kL2lvLnB5) | `98.5% <100.0%> (ø)` | | | [ixmp/backend/jdbc.py](https://app.codecov.io/gh/iiasa/ixmp/pull/524?src=pr&el=tree&filepath=ixmp%2Fbackend%2Fjdbc.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=iiasa#diff-aXhtcC9iYWNrZW5kL2pkYmMucHk=) | `97.4% <ø> (ø)` | | | [ixmp/core/platform.py](https://app.codecov.io/gh/iiasa/ixmp/pull/524?src=pr&el=tree&filepath=ixmp%2Fcore%2Fplatform.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=iiasa#diff-aXhtcC9jb3JlL3BsYXRmb3JtLnB5) | `98.9% <ø> (ø)` | | | [ixmp/core/scenario.py](https://app.codecov.io/gh/iiasa/ixmp/pull/524?src=pr&el=tree&filepath=ixmp%2Fcore%2Fscenario.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=iiasa#diff-aXhtcC9jb3JlL3NjZW5hcmlvLnB5) | `99.6% <100.0%> (+0.8%)` | :arrow_up: | | [ixmp/core/timeseries.py](https://app.codecov.io/gh/iiasa/ixmp/pull/524?src=pr&el=tree&filepath=ixmp%2Fcore%2Ftimeseries.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=iiasa#diff-aXhtcC9jb3JlL3RpbWVzZXJpZXMucHk=) | `98.6% <100.0%> (-0.1%)` | :arrow_down: | | [ixmp/report/operator.py](https://app.codecov.io/gh/iiasa/ixmp/pull/524?src=pr&el=tree&filepath=ixmp%2Freport%2Foperator.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=iiasa#diff-aXhtcC9yZXBvcnQvb3BlcmF0b3IucHk=) | `99.0% <100.0%> (ø)` | | | [ixmp/testing/\_\_init\_\_.py](https://app.codecov.io/gh/iiasa/ixmp/pull/524?src=pr&el=tree&filepath=ixmp%2Ftesting%2F__init__.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=iiasa#diff-aXhtcC90ZXN0aW5nL19faW5pdF9fLnB5) | `95.9% <ø> (ø)` | | | [ixmp/testing/data.py](https://app.codecov.io/gh/iiasa/ixmp/pull/524?src=pr&el=tree&filepath=ixmp%2Ftesting%2Fdata.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=iiasa#diff-aXhtcC90ZXN0aW5nL2RhdGEucHk=) | `97.2% <100.0%> (-0.1%)` | :arrow_down: | | [ixmp/testing/jupyter.py](https://app.codecov.io/gh/iiasa/ixmp/pull/524?src=pr&el=tree&filepath=ixmp%2Ftesting%2Fjupyter.py&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=iiasa#diff-aXhtcC90ZXN0aW5nL2p1cHl0ZXIucHk=) | `100.0% <ø> (ø)` | | | ... and [10 more](https://app.codecov.io/gh/iiasa/ixmp/pull/524?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=iiasa) | |

khaeru commented 3 months ago

Hm, not great that the Jupyter-based tests are consistently failing here…

iiasa / ixmp