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ijmiller2 / COVID-19_Multi-Omics

A repository for collaborative multi-omics data analysis & the covid-omics.app
https://covid-omics.app
MIT License
9 stars 6 forks source link

Missing Scripts #11

Closed NilaiVemula closed 4 years ago

NilaiVemula commented 4 years ago

Hey, I am a student that read your pre-print, and I was interested in looking through some of the analysis your team preformed. I noticed that the src folder has several scripts that are empty. Can you please push the content of these scripts?

ijmiller2 commented 4 years ago

Hi Nilai,

Thanks for your interest and for reaching out. I need to update the directory structure in the README, since we ended up putting most of the code for our analysis in the eda directory. And the code for the website is under src/dash.

Let me know if there's any code you're looking for in particular and I can try to point you in the right direction. Otherwise, I will make a note to try and clean up a bit and improve documentation.

Thanks, Ian

NilaiVemula commented 4 years ago

Hey Ian,

Thanks so much for the quick reply. I found what I was looking for (the code for the volcano plot in Figure 2 in COVID-19_Multi-Omics/eda/KAO/14_KAO_figure_2_version_robust.R). I ended up just searching through the repository rather than navigating the directories.

Thanks, Nilai

ijmiller2 commented 4 years ago

Great, glad you found it! And no problem. Feel free to reach out if you have any other questions.

Best, Ian