Image names ending with .tif

[tischi]

@dlegland I have an issue macro recording the analysis of images whose name ends with .tif Could it be that you are somehow removing the ending when presenting the choices for which images to select?

[dlegland]

Hi, yes maybe. The default behaviour in most MLJ plugins is to use the "short name" of the images, and to add a suffix like "-crop", "-filter"...

maybe a rename command in the beginning of the macro could solve the pbm?

[tischi]

maybe a rename command in the beginning of the macro could solve the pbm?

Yes, it does. Not sure whether this is good though. I think beginners would have zero chance of figuring this out.

[dlegland]

Hmm, not clear to me... When a new image is created, a new name is generated. So the problem is to get image name from the input image name and assuming the processing within plugin, right? The processing will always being plugin-dependent IMHO...

[tischi]

I am fetching the name of the current image, using getTitle():

input = getTitle();
run("Intensity Measurements 2D/3D", "input=["+input+"] labels=mask mean numberofvoxels");

But if input.contains(".tif") it crashes.

[dlegland]

OK, so it seems this is a bug.... I try to have a look. I also cc @iarganda , I think he wrote the plugin originally

[dlegland]

well, I think I found! just need to recompile (i.e., fighting with maven), to get a new version...

[dlegland]

You can try new snapshot version: https://github.com/ijpb/MorphoLibJ/releases/tag/v1.4.3-test

I tried with a 2D tiff image, and got not problem...

[tischi]

Thanks! I trust you :)