Hi,
Thanks for the powerful pipeline. I have issue when running the pipeline for Zebrafish which complain that there is no results for chromosome greater than 22. I think the issue is in feather_split_rongxin.py line 58:
potential_chrs = ['chr' + str(x) for x in list(range(1,23)) + ['X', 'Y']]
For Zebrafish, the potential_chrs should be range(1,26). And for some species for example fruitfly, the chromosome name is not count as numbers.
Will it be better to let user to select the potential_chrs?
Hi, Thanks for the powerful pipeline. I have issue when running the pipeline for Zebrafish which complain that there is no results for chromosome greater than 22. I think the issue is in feather_split_rongxin.py line 58: potential_chrs = ['chr' + str(x) for x in list(range(1,23)) + ['X', 'Y']] For Zebrafish, the potential_chrs should be range(1,26). And for some species for example fruitfly, the chromosome name is not count as numbers. Will it be better to let user to select the potential_chrs?