analyze promoter capture Hi-C

ijuric / MAPS

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analyze promoter capture Hi-C #36

Open BenxiaHu opened 3 years ago

BenxiaHu commented 3 years ago

Hello, Do you think MAPS can analyze promoter capture HiC data?

HuMingLab commented 3 years ago

Hi, MAPS is designed for PLAC-seq and HiChIP data, and it uses short-range reads to measure ChIP enrichment bias. The current version of MAPS cannot be used for promoter capture Hi-C data. I suggest to use the CHiCAGO pipeline (https://pubmed.ncbi.nlm.nih.gov/27306882/).