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ikalatskaya / ISOWN

Apache License 2.0
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Documentation of external_tools #1

Closed zlskidmore closed 7 years ago

zlskidmore commented 7 years ago

Hi,

when running your command I received the following error:

annotating input file with ANNOVAR ...Can't open perl script "~/software/ISOWN/bin/../external_tools/annovar_2012-03-08/annotate_variation.pl": No such file or directory

I assume I need to download annovar and put it in that directory,but it might be good to document that, or add annovar to the list of dependencies on the README

qtrinh commented 7 years ago

As suggested, we added ANNOVAR as a dependency in the README file. Thank you.