search

ikalatskaya / ISOWN

Apache License 2.0
45 stars 15 forks source link

some problems #3

Closed genowis123 closed 6 years ago

genowis123 commented 7 years ago

Hi

when i run programming,error occur. could you tell me why?

qpipeline tabix -m 2021 -d /mnt/sdb/ISOWN1/ISOWN/external_databases/COSMIC_v69.vcf.gz -A -E -p COSMIC_v69 -i test.vcf.temp.annovar.vcf -f /mnt/sdb/ISOWN1/ISOWN/external_databases/hg19_random/genome.fa > db.vcf Segmentation fault

genowis123 commented 7 years ago

ok, I anwser the qusetion by myself. you can set (ulimit -s 65536) on linux

qtrinh commented 6 years ago

Let us know if you have any other questions. Thanks.

EgirardBioinfo commented 6 years ago

Hi, I have the same segmentation fault but do not have root options to change ulimit. Could you provide a solution for that @qtrinh ? I can't create any db you require to run ISOWN. Thanks,