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ikharitonov / vestibular_vr_pipeline

Data extraction and processing pipeline for Rancz Lab
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Notebook 2 (Grab perievent) #5

Open ikharitonov opened 1 month ago

ikharitonov commented 1 month ago

Load csv file saved in step 1 (at USAGE)

EleonoraAmbrad commented 1 month ago

(aeon) (base) ikharitonov@analysis-machine:~/code/vestibular_vr_pipeline$ /home/ikharitonov/anaconda3/envs/aeon/bin/python /home/ikharitonov/code/vestibular_vr_pipeline/batch_perievent_script.py DATASET 0: STARTING DATA_PATH: /home/ikharitonov/RANCZLAB-NAS/data/ONIX/20240730_Mismatch_Experiment/MMclosed&Regular_120824/2024-08-12T16-03-29_B3M2 PHOTOMETRY PATH: /home/ikharitonov/RANCZLAB-NAS/data/ONIX/20240730_Mismatch_Experiment/MMclosed&Regular_120824/photometry/B3M2_MMclosed&Regular_day1/2024_08_12-18_08_18 DATASET 0 FAILED. ERROR: Length of values (19287468) does not match length of index (19287470)

unfortunately still got this error for a couple of datasets today, is it related to the length of photometry? --update: I noticed the issue HDF5 loading error #13, I think that issue addresses this problem I mentioned.