error: -db_soft_mask 40

ikmb-denbi / genome-annotation

A nextflow pipeline with automatic software provisioning to generate hints and subsequent genome model predictions with AUGUSTUS

MIT License

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error: -db_soft_mask 40 #4

Closed MontseTor closed 5 years ago

MontseTor commented 5 years ago

Process: makeblastdb

"Error: [makeblastdb] No sequences matched any of the masks provided. Please ensure that the -parse_seqids option is used in the filtering program as well as makeblastdb. "

Consequently the files .naa, .nab, .nac are not created.

Might be an issue with the version of blast+ used by repeatmasker

marchoeppner commented 5 years ago

Looks valid and is likely related to the outdated blast+ version that is bundled with RM. To maintain conda compatibility, we should remove the rm masking.

marchoeppner commented 5 years ago

No available workaround; rm masking blast databases has therefore been removed.