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ikmb / eagleimp

GNU General Public License v3.0
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Multi-species #4

Closed adamtaiti closed 1 year ago

adamtaiti commented 1 year ago

Hi Lars! That is such a nice work. This is not an issue but a kind request. I would like to make use of eagleimp in bovine and one of the restrictions is the chromosome numbering (1-22, X and Y). Is it possible to implement a way to generalize the code for especies with larger number of chromosomes or to take into account autosomes vs sexual/MT that would allow users to use it in different species?

Thank you in advance!

lwienbrandt commented 1 year ago

Hi Adam. Thanks for your suggestion, and it's indeed a good one. I will have a look into it and keep you updated. The only issue is time (as always... ;-)).

lwienbrandt commented 1 year ago

Hey, I've finally managed to spend some time for this issue. I hope that it is solved by now. So, there is no chromosome number limitation anymore and also it can be arbitrarily named. However, the launch script still focuses on human chromosomes, i.e. it handles 23/X with special treatment. Have fun!