hdf5 export should add axis tag information

ilastik / ilastik4ij

ImageJ plugins to run ilastik workflows

MIT License

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hdf5 export should add axis tag information #36

Closed k-dominik closed 2 months ago

k-dominik commented 4 years ago

in order to interpret axes correctly, it is necessary to add this information. Since this is intended for ilastik use, we should write out vigra-compatible axistags.

Tomaz-Vieira commented 4 years ago

I'd go even further and say we should add both the vigra axistags as well as the native h5 axis labels via dimension sacles so that it can also be interpreted by other consumers of h5

emilmelnikov commented 11 months ago

It seems that dimension scales are not supported by JHDF5.

k-dominik commented 5 months ago

I'll bump this one, as it is an issue with opening the exported data in MoBiE, unfortunately. We need at least the vigra-style axistags.

imagesc-bot commented 5 months ago

This issue has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/check-results-of-batch-processing-ilastik/92321/6

k-dominik commented 2 months ago

closed via #126