ilastik / ilastik4ij

ImageJ plugins to run ilastik workflows
MIT License
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Request for FIJI plugin to return available datasets for any given HDF5 file #93

Closed pdd2110 closed 10 months ago

pdd2110 commented 2 years ago

Hi,

Pretty simple request really. I'm just looking for a command in FIJI that returns the available datasets within a given HDF5 file. I run a lot of the Ilastik IO functions in batch mode, and from time to time I'll get inconsistent (but predictable) datasets names. Attempting to open an unavailable dataset kills the batch run by prompting the user for input. Knowing the available datasets ahead of time would solve this issue.

Looking through the java code on here, I think findAvailableDatasets in the datasetEntryProvider is similar to what I have in mind, but I'm not proficient enough in Java to write my own plugin... Any help would be much appreciated!

P