Add ImageJ command for listing HDF5 datasets

ilastik / ilastik4ij

ImageJ plugins to run ilastik workflows

MIT License

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Add ImageJ command for listing HDF5 datasets #95

Closed emilmelnikov closed 10 months ago

emilmelnikov commented 2 years ago

Also refactor DatasetEntry: save shape and dtype as fields, and move verboseName to the toString() method.

Closes https://github.com/ilastik/ilastik4ij/issues/93

emilmelnikov commented 2 years ago

The new command shows a table with path, shape, dtype and axistags for each dataset in a file. However, I'm not sure how to work with such tables from ImageJ macro language.

I tried to use the macro table API (search for Table Functions), but it does not work.

k-dominik commented 2 years ago

Heya, this is great, I think the test failures point at some colon missing in new toString...:

<...dataset_without_axes[:] (64, 64) int64> but was:<...dataset_without_axes[] (64, 64) int64>

with regards to the macro table API, maybe someone on the forum can help?

imagesc-bot commented 2 years ago

This pull request has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/read-scijava-tables-in-imagej-macro/67119/1

emilmelnikov commented 10 months ago

Superseded by https://github.com/ilastik/ilastik4ij/pull/115.

pdd2110 commented 9 months ago

Hi, thanks for adding this feature!

Any updates on how to access the scijava table via the macro language? I saw that the image.sc forum post hasn't had any activity. Even a callfunction would be helpful.