Replace Frankenconda with clean env

[matthiasdiener]

Maybe fixes Lassen issues

xref https://github.com/conda/conda/issues/10133 https://github.com/ecisneros8/pyrometheus/pull/26

[matthiasdiener]

Can you give this a spin on Lassen @mtcam?

[MTCam]

Can you give this a spin on Lassen @MTCam?

Sorry, just now catching this. I'll get it spinning right away. Update:

It still fails. Here's where it starts failing, then it does this several times in a row trying different things before it actually finally dies.

``` [mtcampbe@lassen709:test_nozzle]$ git clone -b exorcise-frankenconda git@bitbucket.org:/illinois-ceesd/emirge Cloning into 'emirge'... The requested repository either does not exist or you do not have access. If you believe this repository exists and you have access, make sure you're authenticated. fatal: Could not read from remote repository. Please make sure you have the correct access rights and the repository exists. [mtcampbe@lassen709:test_nozzle]$ git clone -b exorcise-frankenconda git@github.com:/illinois-ceesd/emirge Cloning into 'emirge'... remote: Enumerating objects: 603, done. remote: Counting objects: 100% (131/131), done. remote: Compressing objects: 100% (88/88), done. remote: Total 603 (delta 81), reused 59 (delta 41), pack-reused 472 Receiving objects: 100% (603/603), 134.06 KiB | 1024.00 KiB/s, done. Resolving deltas: 100% (339/339), done. [mtcampbe@lassen709:test_nozzle]$ cd emirge [mtcampbe@lassen709:emirge]$ ls LICENSE install-conda.sh install-spack.sh install.sh pull-packages.sh README.md install-pip-dependencies.sh install-src-package.sh makezip.sh version.sh [mtcampbe@lassen709:emirge]$ ./install.sh --env-name=production.nozzle ##################################################### # This script installs mirgecom, and dependencies. # ##################################################### ==== Conda installation ==== Installing Miniforge in /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/miniforge3. % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 161 100 161 0 0 355 0 --:--:-- --:--:-- --:--:-- 356 100 635 100 635 0 0 1082 0 --:--:-- --:--:-- --:--:-- 620k 100 59.7M 100 59.7M 0 0 24.2M 0 0:00:02 0:00:02 --:--:-- 42.4M PREFIX=/g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/miniforge3 Unpacking payload ... Extracting "libstdcxx-ng-9.3.0-h22bc1b8_18.tar.bz2" Extracting "libgomp-9.3.0-hc7a5eb4_18.tar.bz2" Extracting "setuptools-49.6.0-py39hc1b9086_3.tar.bz2" Extracting "_openmp_mutex-4.5-1_gnu.tar.bz2" Extracting "readline-8.1-h5c45dff_0.tar.bz2" Extracting "python-3.9.4-h8137939_0_cpython.tar.bz2" Extracting "ca-certificates-2020.12.5-h1084571_0.tar.bz2" Extracting "cffi-1.14.5-py39hfce1a3b_0.tar.bz2" Extracting "ruamel_yaml-0.15.80-py39ha810350_1004.tar.bz2" Extracting "pyopenssl-20.0.1-pyhd8ed1ab_0.tar.bz2" Extracting "sqlite-3.35.5-h961021d_0.tar.bz2" Extracting "urllib3-1.26.4-pyhd8ed1ab_0.tar.bz2" Extracting "ncurses-6.2-hea85c5d_4.tar.bz2" Extracting "brotlipy-0.7.0-py39ha810350_1001.tar.bz2" Extracting "tzdata-2021a-he74cb21_0.tar.bz2" Extracting "yaml-0.2.5-h6eb9509_0.tar.bz2" Extracting "idna-2.10-pyh9f0ad1d_0.tar.bz2" Extracting "tk-8.6.10-h38e1d09_1.tar.bz2" Extracting "libffi-3.3-hea85c5d_2.tar.bz2" Extracting "xz-5.2.5-h6eb9509_1.tar.bz2" Extracting "ld_impl_linux-ppc64le-2.35.1-ha35d02b_2.tar.bz2" Extracting "pycosat-0.6.3-py39ha810350_1006.tar.bz2" Extracting "conda-4.10.1-py39hc1b9086_0.tar.bz2" Extracting "_libgcc_mutex-0.1-conda_forge.tar.bz2" Extracting "openssl-1.1.1k-h4e0d66e_0.tar.bz2" Extracting "python_abi-3.9-1_cp39.tar.bz2" Extracting "six-1.16.0-pyh6c4a22f_0.tar.bz2" Extracting "pycparser-2.20-pyh9f0ad1d_2.tar.bz2" Extracting "cryptography-3.4.7-py39h1b86913_0.tar.bz2" Extracting "wheel-0.36.2-pyhd3deb0d_0.tar.bz2" Extracting "conda-package-handling-1.7.3-py39ha810350_0.tar.bz2" Extracting "requests-2.25.1-pyhd3deb0d_0.tar.bz2" Extracting "pip-21.1.1-pyhd8ed1ab_0.tar.bz2" Extracting "certifi-2020.12.5-py39hc1b9086_1.tar.bz2" Extracting "zlib-1.2.11-h6eb9509_1010.tar.bz2" Extracting "pysocks-1.7.1-py39hc1b9086_3.tar.bz2" Extracting "chardet-4.0.0-py39hc1b9086_1.tar.bz2" Extracting "libgcc-ng-9.3.0-hc7a5eb4_18.tar.bz2" Extracting "tqdm-4.60.0-pyhd8ed1ab_0.tar.bz2" __ __ ______ ___ ____ _____ ___ / /_ ____ _ / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/ / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ / / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/ /_/ Transaction Prefix: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3 Updating specs: - python==3.9.4=h8137939_0_cpython - _libgcc_mutex==0.1=conda_forge - ca-certificates==2020.12.5=h1084571_0 - ld_impl_linux-ppc64le==2.35.1=ha35d02b_2 - libstdcxx-ng==9.3.0=h22bc1b8_18 - tzdata==2021a=he74cb21_0 - libgomp==9.3.0=hc7a5eb4_18 - _openmp_mutex==4.5=1_gnu - libgcc-ng==9.3.0=hc7a5eb4_18 - libffi==3.3=hea85c5d_2 - ncurses==6.2=hea85c5d_4 - openssl==1.1.1k=h4e0d66e_0 - xz==5.2.5=h6eb9509_1 - yaml==0.2.5=h6eb9509_0 - zlib==1.2.11=h6eb9509_1010 - readline==8.1=h5c45dff_0 - tk==8.6.10=h38e1d09_1 - sqlite==3.35.5=h961021d_0 - idna==2.10=pyh9f0ad1d_0 - pycparser==2.20=pyh9f0ad1d_2 - python_abi==3.9=1_cp39 - six==1.16.0=pyh6c4a22f_0 - tqdm==4.60.0=pyhd8ed1ab_0 - wheel==0.36.2=pyhd3deb0d_0 - certifi==2020.12.5=py39hc1b9086_1 - cffi==1.14.5=py39hfce1a3b_0 - chardet==4.0.0=py39hc1b9086_1 - conda-package-handling==1.7.3=py39ha810350_0 - pycosat==0.6.3=py39ha810350_1006 - pysocks==1.7.1=py39hc1b9086_3 - ruamel_yaml==0.15.80=py39ha810350_1004 - brotlipy==0.7.0=py39ha810350_1001 - cryptography==3.4.7=py39h1b86913_0 - setuptools==49.6.0=py39hc1b9086_3 - pip==21.1.1=pyhd8ed1ab_0 - pyopenssl==20.0.1=pyhd8ed1ab_0 - urllib3==1.26.4=pyhd8ed1ab_0 - requests==2.25.1=pyhd3deb0d_0 - conda==4.10.1=py39hc1b9086_0 Package Version Build Channel Size ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── Install: ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── _libgcc_mutex 0.1 conda_forge conda-forge/linux-ppc64le/_libgcc_mutex-0.1-conda_forge.tar.bz2 Cached _openmp_mutex 4.5 1_gnu conda-forge/linux-ppc64le/_openmp_mutex-4.5-1_gnu.tar.bz2 Cached brotlipy 0.7.0 py39ha810350_1001 conda-forge/linux-ppc64le/brotlipy-0.7.0-py39ha810350_1001.tar.bz2 Cached ca-certificates 2020.12.5 h1084571_0 conda-forge/linux-ppc64le/ca-certificates-2020.12.5-h1084571_0.tar.bz2 Cached certifi 2020.12.5 py39hc1b9086_1 conda-forge/linux-ppc64le/certifi-2020.12.5-py39hc1b9086_1.tar.bz2 Cached cffi 1.14.5 py39hfce1a3b_0 conda-forge/linux-ppc64le/cffi-1.14.5-py39hfce1a3b_0.tar.bz2 Cached chardet 4.0.0 py39hc1b9086_1 conda-forge/linux-ppc64le/chardet-4.0.0-py39hc1b9086_1.tar.bz2 Cached conda 4.10.1 py39hc1b9086_0 conda-forge/linux-ppc64le/conda-4.10.1-py39hc1b9086_0.tar.bz2 Cached conda-package-handling 1.7.3 py39ha810350_0 conda-forge/linux-ppc64le/conda-package-handling-1.7.3-py39ha810350_0.tar.bz2 Cached cryptography 3.4.7 py39h1b86913_0 conda-forge/linux-ppc64le/cryptography-3.4.7-py39h1b86913_0.tar.bz2 Cached idna 2.10 pyh9f0ad1d_0 conda-forge/noarch/idna-2.10-pyh9f0ad1d_0.tar.bz2 Cached ld_impl_linux-ppc64le 2.35.1 ha35d02b_2 conda-forge/linux-ppc64le/ld_impl_linux-ppc64le-2.35.1-ha35d02b_2.tar.bz2 Cached libffi 3.3 hea85c5d_2 conda-forge/linux-ppc64le/libffi-3.3-hea85c5d_2.tar.bz2 Cached libgcc-ng 9.3.0 hc7a5eb4_18 conda-forge/linux-ppc64le/libgcc-ng-9.3.0-hc7a5eb4_18.tar.bz2 Cached libgomp 9.3.0 hc7a5eb4_18 conda-forge/linux-ppc64le/libgomp-9.3.0-hc7a5eb4_18.tar.bz2 Cached libstdcxx-ng 9.3.0 h22bc1b8_18 conda-forge/linux-ppc64le/libstdcxx-ng-9.3.0-h22bc1b8_18.tar.bz2 Cached ncurses 6.2 hea85c5d_4 conda-forge/linux-ppc64le/ncurses-6.2-hea85c5d_4.tar.bz2 Cached openssl 1.1.1k h4e0d66e_0 conda-forge/linux-ppc64le/openssl-1.1.1k-h4e0d66e_0.tar.bz2 Cached pip 21.1.1 pyhd8ed1ab_0 conda-forge/noarch/pip-21.1.1-pyhd8ed1ab_0.tar.bz2 Cached pycosat 0.6.3 py39ha810350_1006 conda-forge/linux-ppc64le/pycosat-0.6.3-py39ha810350_1006.tar.bz2 Cached pycparser 2.20 pyh9f0ad1d_2 conda-forge/noarch/pycparser-2.20-pyh9f0ad1d_2.tar.bz2 Cached pyopenssl 20.0.1 pyhd8ed1ab_0 conda-forge/noarch/pyopenssl-20.0.1-pyhd8ed1ab_0.tar.bz2 Cached pysocks 1.7.1 py39hc1b9086_3 conda-forge/linux-ppc64le/pysocks-1.7.1-py39hc1b9086_3.tar.bz2 Cached python 3.9.4 h8137939_0_cpython conda-forge/linux-ppc64le/python-3.9.4-h8137939_0_cpython.tar.bz2 Cached python_abi 3.9 1_cp39 conda-forge/linux-ppc64le/python_abi-3.9-1_cp39.tar.bz2 Cached readline 8.1 h5c45dff_0 conda-forge/linux-ppc64le/readline-8.1-h5c45dff_0.tar.bz2 Cached requests 2.25.1 pyhd3deb0d_0 conda-forge/noarch/requests-2.25.1-pyhd3deb0d_0.tar.bz2 Cached ruamel_yaml 0.15.80 py39ha810350_1004 conda-forge/linux-ppc64le/ruamel_yaml-0.15.80-py39ha810350_1004.tar.bz2 Cached setuptools 49.6.0 py39hc1b9086_3 conda-forge/linux-ppc64le/setuptools-49.6.0-py39hc1b9086_3.tar.bz2 Cached six 1.16.0 pyh6c4a22f_0 conda-forge/noarch/six-1.16.0-pyh6c4a22f_0.tar.bz2 Cached sqlite 3.35.5 h961021d_0 conda-forge/linux-ppc64le/sqlite-3.35.5-h961021d_0.tar.bz2 Cached tk 8.6.10 h38e1d09_1 conda-forge/linux-ppc64le/tk-8.6.10-h38e1d09_1.tar.bz2 Cached tqdm 4.60.0 pyhd8ed1ab_0 conda-forge/noarch/tqdm-4.60.0-pyhd8ed1ab_0.tar.bz2 Cached tzdata 2021a he74cb21_0 conda-forge/noarch/tzdata-2021a-he74cb21_0.tar.bz2 Cached urllib3 1.26.4 pyhd8ed1ab_0 conda-forge/noarch/urllib3-1.26.4-pyhd8ed1ab_0.tar.bz2 Cached wheel 0.36.2 pyhd3deb0d_0 conda-forge/noarch/wheel-0.36.2-pyhd3deb0d_0.tar.bz2 Cached xz 5.2.5 h6eb9509_1 conda-forge/linux-ppc64le/xz-5.2.5-h6eb9509_1.tar.bz2 Cached yaml 0.2.5 h6eb9509_0 conda-forge/linux-ppc64le/yaml-0.2.5-h6eb9509_0.tar.bz2 Cached zlib 1.2.11 h6eb9509_1010 conda-forge/linux-ppc64le/zlib-1.2.11-h6eb9509_1010.tar.bz2 Cached Summary: Install: 39 packages Total download: 0 B ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── Transaction starting Linking _libgcc_mutex-0.1-conda_forge Linking ca-certificates-2020.12.5-h1084571_0 Linking ld_impl_linux-ppc64le-2.35.1-ha35d02b_2 Linking libstdcxx-ng-9.3.0-h22bc1b8_18 Linking tzdata-2021a-he74cb21_0 Linking libgomp-9.3.0-hc7a5eb4_18 Linking _openmp_mutex-4.5-1_gnu Linking libgcc-ng-9.3.0-hc7a5eb4_18 Linking zlib-1.2.11-h6eb9509_1010 Linking yaml-0.2.5-h6eb9509_0 Linking xz-5.2.5-h6eb9509_1 Linking openssl-1.1.1k-h4e0d66e_0 Linking ncurses-6.2-hea85c5d_4 Linking libffi-3.3-hea85c5d_2 Linking tk-8.6.10-h38e1d09_1 Linking readline-8.1-h5c45dff_0 Linking sqlite-3.35.5-h961021d_0 Linking python-3.9.4-h8137939_0_cpython Linking wheel-0.36.2-pyhd3deb0d_0 Linking tqdm-4.60.0-pyhd8ed1ab_0 Linking six-1.16.0-pyh6c4a22f_0 Linking python_abi-3.9-1_cp39 Linking pycparser-2.20-pyh9f0ad1d_2 Linking idna-2.10-pyh9f0ad1d_0 Linking ruamel_yaml-0.15.80-py39ha810350_1004 Linking pysocks-1.7.1-py39hc1b9086_3 Linking pycosat-0.6.3-py39ha810350_1006 Linking conda-package-handling-1.7.3-py39ha810350_0 Linking chardet-4.0.0-py39hc1b9086_1 Linking certifi-2020.12.5-py39hc1b9086_1 Linking cffi-1.14.5-py39hfce1a3b_0 Linking setuptools-49.6.0-py39hc1b9086_3 Linking cryptography-3.4.7-py39h1b86913_0 Linking brotlipy-0.7.0-py39ha810350_1001 Linking pip-21.1.1-pyhd8ed1ab_0 Linking pyopenssl-20.0.1-pyhd8ed1ab_0 Linking urllib3-1.26.4-pyhd8ed1ab_0 Linking requests-2.25.1-pyhd3deb0d_0 Linking conda-4.10.1-py39hc1b9086_0 Transaction finished installation finished. ==== Fetching mirgecom Cloning into 'mirgecom'... remote: Enumerating objects: 8018, done. remote: Counting objects: 100% (2120/2120), done. remote: Compressing objects: 100% (754/754), done. remote: Total 8018 (delta 1527), reused 1867 (delta 1345), pack-reused 5898 Receiving objects: 100% (8018/8018), 1.85 MiB | 5.62 MiB/s, done. Resolving deltas: 100% (5692/5692), done. ==== Create production.nozzle conda environment Collecting package metadata (repodata.json): done Solving environment: done Downloading and Extracting Packages ptyprocess-0.7.0 | 16 KB | #################################################################################################################### | 100% yaml-cpp-0.6.3 | 226 KB | #################################################################################################################### | 100% libssh2-1.9.0 | 246 KB | #################################################################################################################### | 100% traitlets-5.0.5 | 81 KB | #################################################################################################################### | 100% pytest-6.2.4 | 433 KB | #################################################################################################################### | 100% pyzmq-22.0.3 | 523 KB | #################################################################################################################### | 100% oct2py-5.2.0 | 37 KB | #################################################################################################################### | 100% expat-2.4.1 | 174 KB | #################################################################################################################### | 100% git-2.30.2 | 17.4 MB | #################################################################################################################### | 100% ocl-icd-2.3.0 | 104 KB | #################################################################################################################### | 100% ipython_genutils-0.2 | 21 KB | #################################################################################################################### | 100% libedit-3.1.20191231 | 153 KB | #################################################################################################################### | 100% jedi-0.18.0 | 924 KB | #################################################################################################################### | 100% libgfortran-ng-9.3.0 | 22 KB | #################################################################################################################### | 100% pymetis-2020.1 | 66 KB | #################################################################################################################### | 100% libgfortran5-9.3.0 | 1.5 MB | #################################################################################################################### | 100% krb5-1.19.1 | 1.6 MB | #################################################################################################################### | 100% decorator-5.0.9 | 11 KB | #################################################################################################################### | 100% sundials-5.7.0 | 1.2 MB | #################################################################################################################### | 100% pickleshare-0.7.5 | 9 KB | #################################################################################################################### | 100% hdf5-1.10.6 | 3.5 MB | #################################################################################################################### | 100% packaging-20.9 | 35 KB | #################################################################################################################### | 100% parso-0.8.2 | 68 KB | #################################################################################################################### | 100% scipy-1.6.3 | 22.0 MB | #################################################################################################################### | 100% icu-68.1 | 13.5 MB | #################################################################################################################### | 100% metis-5.1.0 | 4.2 MB | #################################################################################################################### | 100% islpy-2021.1 | 2.6 MB | #################################################################################################################### | 100% pip-21.1.2 | 1.1 MB | #################################################################################################################### | 100% isl-0.22.1 | 1.0 MB | #################################################################################################################### | 100% ipyparallel-6.3.0 | 315 KB | #################################################################################################################### | 100% prompt-toolkit-3.0.1 | 244 KB | #################################################################################################################### | 100% ruamel_yaml-0.15.80 | 264 KB | #################################################################################################################### | 100% h5py-3.2.1 | 1.3 MB | #################################################################################################################### | 100% fmt-7.1.2 | 193 KB | #################################################################################################################### | 100% cached-property-1.5. | 4 KB | #################################################################################################################### | 100% pexpect-4.8.0 | 47 KB | #################################################################################################################### | 100% python-3.8.10 | 12.3 MB | #################################################################################################################### | 100% curl-7.76.1 | 93 KB | #################################################################################################################### | 100% pyopencl-2021.2.2 | 700 KB | #################################################################################################################### | 100% pcre-8.44 | 287 KB | #################################################################################################################### | 100% ipykernel-5.5.5 | 167 KB | #################################################################################################################### | 100% libcblas-3.9.0 | 11 KB | #################################################################################################################### | 100% metakernel-0.27.5 | 180 KB | #################################################################################################################### | 100% libblas-3.9.0 | 11 KB | #################################################################################################################### | 100% iniconfig-1.1.1 | 8 KB | #################################################################################################################### | 100% pygments-2.9.0 | 754 KB | #################################################################################################################### | 100% python-dateutil-2.8. | 220 KB | #################################################################################################################### | 100% cantera-2.5.1 | 2.0 MB | #################################################################################################################### | 100% numpy-1.20.3 | 5.8 MB | #################################################################################################################### | 100% tornado-6.1 | 648 KB | #################################################################################################################### | 100% jupyter_client-6.1.1 | 79 KB | #################################################################################################################### | 100% python_abi-3.8 | 4 KB | #################################################################################################################### | 100% libev-4.33 | 109 KB | #################################################################################################################### | 100% pytools-2021.2.6 | 56 KB | #################################################################################################################### | 100% perl-5.32.0 | 13.2 MB | #################################################################################################################### | 100% more-itertools-8.8.0 | 39 KB | #################################################################################################################### | 100% jupyter_core-4.7.1 | 72 KB | #################################################################################################################### | 100% tbb-2020.2 | 1.5 MB | #################################################################################################################### | 100% libsodium-1.0.18 | 309 KB | #################################################################################################################### | 100% appdirs-1.4.4 | 13 KB | #################################################################################################################### | 100% mpi-1.0 | 4 KB | #################################################################################################################### | 100% liblapack-3.9.0 | 11 KB | #################################################################################################################### | 100% mako-1.1.4 | 58 KB | #################################################################################################################### | 100% backcall-0.2.0 | 13 KB | #################################################################################################################### | 100% setuptools-49.6.0 | 914 KB | #################################################################################################################### | 100% wcwidth-0.2.5 | 33 KB | #################################################################################################################### | 100% ipython-7.23.1 | 1.1 MB | #################################################################################################################### | 100% libopenblas-0.3.15 | 5.5 MB | #################################################################################################################### | 100% matplotlib-inline-0. | 11 KB | #################################################################################################################### | 100% libxml2-2.9.12 | 958 KB | #################################################################################################################### | 100% toml-0.10.2 | 18 KB | #################################################################################################################### | 100% markupsafe-2.0.1 | 23 KB | #################################################################################################################### | 100% attrs-21.2.0 | 44 KB | #################################################################################################################### | 100% pyparsing-2.4.7 | 60 KB | #################################################################################################################### | 100% libcantera-2.5.1 | 1.6 MB | #################################################################################################################### | 100% libclang-cpp11.1-11. | 18.1 MB | #################################################################################################################### | 100% pluggy-0.13.1 | 29 KB | #################################################################################################################### | 100% libcurl-7.76.1 | 360 KB | #################################################################################################################### | 100% libllvm11-11.1.0 | 30.4 MB | #################################################################################################################### | 100% certifi-2020.12.5 | 143 KB | #################################################################################################################### | 100% clinfo-3.0.21.02.21 | 63 KB | #################################################################################################################### | 100% libnghttp2-1.43.0 | 960 KB | #################################################################################################################### | 100% portalocker-1.7.0 | 19 KB | #################################################################################################################### | 100% c-ares-1.17.1 | 117 KB | #################################################################################################################### | 100% backports-1.0 | 4 KB | #################################################################################################################### | 100% libhwloc-2.4.1 | 2.8 MB | #################################################################################################################### | 100% zeromq-4.3.4 | 394 KB | #################################################################################################################### | 100% suitesparse-5.7.2 | 2.7 MB | #################################################################################################################### | 100% cached_property-1.5. | 11 KB | #################################################################################################################### | 100% py-1.10.0 | 73 KB | #################################################################################################################### | 100% pocl-1.6 | 6.5 MB | #################################################################################################################### | 100% gettext-0.19.8.1 | 4.0 MB | #################################################################################################################### | 100% mpich-3.4.1 | 10.7 MB | #################################################################################################################### | 100% libiconv-1.16 | 1.4 MB | #################################################################################################################### | 100% backports.functools_ | 9 KB | #################################################################################################################### | 100% octave_kernel-0.32.0 | 29 KB | #################################################################################################################### | 100% mpi4py-3.0.3 | 568 KB | #################################################################################################################### | 100% Preparing transaction: done Verifying transaction: done Executing transaction: done # # To activate this environment, use # # $ conda activate production.nozzle # # To deactivate an active environment, use # # $ conda deactivate Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan ## environment location: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle added / updated specs: - pocl-cuda The following packages will be downloaded: package | build ---------------------------|----------------- pocl-cuda-1.6 | ha9ab2d0_4 60 KB conda-forge ------------------------------------------------------------ Total: 60 KB The following NEW packages will be INSTALLED: pocl-cuda conda-forge/linux-ppc64le::pocl-cuda-1.6-ha9ab2d0_4 Downloading and Extracting Packages pocl-cuda-1.6 | 60 KB | #################################################################################################################### | 100% Preparing transaction: done Verifying transaction: done Executing transaction: done ==== Installing pip packages ==== Installing pip packages from /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/mirgecom/requirements.txt Collecting mako Using cached Mako-1.1.4-py2.py3-none-any.whl (75 kB) Collecting MarkupSafe>=0.9.2 Using cached MarkupSafe-2.0.1-py3-none-any.whl Installing collected packages: MarkupSafe, mako Successfully installed MarkupSafe-2.0.1 mako-1.1.4 Collecting pybind11 Using cached pybind11-2.6.2-py2.py3-none-any.whl (191 kB) Installing collected packages: pybind11 Successfully installed pybind11-2.6.2 Collecting pytest Using cached pytest-6.2.4-py3-none-any.whl (280 kB) Collecting pudb Using cached pudb-2021.1-py3-none-any.whl Collecting flake8 Using cached flake8-3.9.2-py2.py3-none-any.whl (73 kB) Collecting pep8-naming Using cached pep8_naming-0.11.1-py2.py3-none-any.whl (8.4 kB) Collecting flake8-quotes Using cached flake8_quotes-3.2.0-py3-none-any.whl Collecting flake8-bugbear Using cached flake8_bugbear-21.4.3-py36.py37.py38-none-any.whl (17 kB) Collecting pytest-pudb Using cached pytest_pudb-0.7.0-py2.py3-none-any.whl (4.7 kB) Collecting sphinx Using cached Sphinx-4.0.2-py3-none-any.whl (2.9 MB) Collecting sphinx_math_dollar Using cached sphinx_math_dollar-1.2-py3-none-any.whl Collecting sphinx_copybutton Using cached sphinx_copybutton-0.3.1-py3-none-any.whl (10 kB) Collecting furo Using cached furo-2021.4.11b34-py3-none-any.whl (62 kB) Collecting toml Using cached toml-0.10.2-py2.py3-none-any.whl (16 kB) Collecting packaging Using cached packaging-20.9-py2.py3-none-any.whl (40 kB) Collecting py>=1.8.2 Using cached py-1.10.0-py2.py3-none-any.whl (97 kB) Collecting iniconfig Using cached iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB) Collecting pluggy<1.0.0a1,>=0.12 Using cached pluggy-0.13.1-py2.py3-none-any.whl (18 kB) Collecting attrs>=19.2.0 Using cached attrs-21.2.0-py2.py3-none-any.whl (53 kB) Collecting jedi<1,>=0.18 Using cached jedi-0.18.0-py2.py3-none-any.whl (1.4 MB) Collecting pygments>=2.7.4 Using cached Pygments-2.9.0-py3-none-any.whl (1.0 MB) Collecting urwid>=1.1.1 Using cached urwid-2.1.2-py3-none-any.whl Collecting parso<0.9.0,>=0.8.0 Using cached parso-0.8.2-py2.py3-none-any.whl (94 kB) Collecting mccabe<0.7.0,>=0.6.0 Using cached mccabe-0.6.1-py2.py3-none-any.whl (8.6 kB) Collecting pyflakes<2.4.0,>=2.3.0 Using cached pyflakes-2.3.1-py2.py3-none-any.whl (68 kB) Collecting pycodestyle<2.8.0,>=2.7.0 Using cached pycodestyle-2.7.0-py2.py3-none-any.whl (41 kB) Collecting flake8-polyfill<2,>=1.0.2 Using cached flake8_polyfill-1.0.2-py2.py3-none-any.whl (7.3 kB) Collecting sphinxcontrib-htmlhelp Using cached sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl (100 kB) Collecting Jinja2>=2.3 Using cached Jinja2-3.0.1-py3-none-any.whl (133 kB) Collecting sphinxcontrib-jsmath Using cached sphinxcontrib_jsmath-1.0.1-py2.py3-none-any.whl (5.1 kB) Collecting sphinxcontrib-qthelp Using cached sphinxcontrib_qthelp-1.0.3-py2.py3-none-any.whl (90 kB) Collecting docutils<0.18,>=0.14 Using cached docutils-0.17.1-py2.py3-none-any.whl (575 kB) Collecting babel>=1.3 Using cached Babel-2.9.1-py2.py3-none-any.whl (8.8 MB) Collecting imagesize Using cached imagesize-1.2.0-py2.py3-none-any.whl (4.8 kB) Collecting alabaster<0.8,>=0.7 Using cached alabaster-0.7.12-py2.py3-none-any.whl (14 kB) Collecting snowballstemmer>=1.1 Using cached snowballstemmer-2.1.0-py2.py3-none-any.whl (93 kB) Collecting sphinxcontrib-applehelp Using cached sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl (121 kB) Requirement already satisfied: setuptools in ./miniforge3/lib/python3.9/site-packages (from sphinx) (49.6.0.post20210108) Requirement already satisfied: requests>=2.5.0 in ./miniforge3/lib/python3.9/site-packages (from sphinx) (2.25.1) Collecting sphinxcontrib-devhelp Using cached sphinxcontrib_devhelp-1.0.2-py2.py3-none-any.whl (84 kB) Collecting sphinxcontrib-serializinghtml Using cached sphinxcontrib_serializinghtml-1.1.5-py2.py3-none-any.whl (94 kB) Collecting pytz>=2015.7 Using cached pytz-2021.1-py2.py3-none-any.whl (510 kB) Requirement already satisfied: MarkupSafe>=2.0 in ./miniforge3/lib/python3.9/site-packages (from Jinja2>=2.3->sphinx) (2.0.1) Requirement already satisfied: idna<3,>=2.5 in ./miniforge3/lib/python3.9/site-packages (from requests>=2.5.0->sphinx) (2.10) Requirement already satisfied: certifi>=2017.4.17 in ./miniforge3/lib/python3.9/site-packages (from requests>=2.5.0->sphinx) (2020.12.5) Requirement already satisfied: chardet<5,>=3.0.2 in ./miniforge3/lib/python3.9/site-packages (from requests>=2.5.0->sphinx) (4.0.0) Requirement already satisfied: urllib3<1.27,>=1.21.1 in ./miniforge3/lib/python3.9/site-packages (from requests>=2.5.0->sphinx) (1.26.4) Collecting beautifulsoup4 Using cached beautifulsoup4-4.9.3-py3-none-any.whl (115 kB) Collecting sphinx Using cached Sphinx-3.5.4-py3-none-any.whl (2.8 MB) Collecting docutils<0.18,>=0.14 Using cached docutils-0.16-py2.py3-none-any.whl (548 kB) Collecting soupsieve>1.2 Using cached soupsieve-2.2.1-py3-none-any.whl (33 kB) Collecting pyparsing>=2.0.2 Using cached pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Installing collected packages: pytz, pyparsing, pyflakes, pycodestyle, parso, mccabe, urwid, toml, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, snowballstemmer, pygments, py, pluggy, packaging, Jinja2, jedi, iniconfig, imagesize, flake8, docutils, babel, attrs, alabaster, sphinx, pytest, pudb, flake8-polyfill, beautifulsoup4, sphinx-math-dollar, sphinx-copybutton, pytest-pudb, pep8-naming, furo, flake8-quotes, flake8-bugbear Successfully installed Jinja2-3.0.1 alabaster-0.7.12 attrs-21.2.0 babel-2.9.1 beautifulsoup4-4.9.3 docutils-0.16 flake8-3.9.2 flake8-bugbear-21.4.3 flake8-polyfill-1.0.2 flake8-quotes-3.2.0 furo-2021.4.11b34 imagesize-1.2.0 iniconfig-1.1.1 jedi-0.18.0 mccabe-0.6.1 packaging-20.9 parso-0.8.2 pep8-naming-0.11.1 pluggy-0.13.1 pudb-2021.1 py-1.10.0 pycodestyle-2.7.0 pyflakes-2.3.1 pygments-2.9.0 pyparsing-2.4.7 pytest-6.2.4 pytest-pudb-0.7.0 pytz-2021.1 snowballstemmer-2.1.0 soupsieve-2.2.1 sphinx-3.5.4 sphinx-copybutton-0.3.1 sphinx-math-dollar-1.2 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.2 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.3 sphinxcontrib-serializinghtml-1.1.5 toml-0.10.2 urwid-2.1.2 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 289: powerpc64le-conda-linux-gnu-cc: command not found Obtaining pymbolic from git+https://github.com/inducer/pymbolic.git#egg=pymbolic (from -r /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/mirgecom/requirements.txt (line 11)) Cloning https://github.com/inducer/pymbolic.git to ./pymbolic Running command git clone -q https://github.com/inducer/pymbolic.git /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/pymbolic Obtaining loopy from git+https://github.com/inducer/loopy.git#egg=loopy (from -r /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/mirgecom/requirements.txt (line 13)) Cloning https://github.com/inducer/loopy.git to ./loopy Running command git clone -q https://github.com/inducer/loopy.git /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/loopy Running command git submodule update --init --recursive -q Obtaining dagrt from git+https://github.com/inducer/dagrt.git#egg=dagrt (from -r /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/mirgecom/requirements.txt (line 14)) Cloning https://github.com/inducer/dagrt.git to ./dagrt Running command git clone -q https://github.com/inducer/dagrt.git /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/dagrt Obtaining leap from git+https://github.com/inducer/leap.git#egg=leap (from -r /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/mirgecom/requirements.txt (line 15)) Cloning https://github.com/inducer/leap.git to ./leap Running command git clone -q https://github.com/inducer/leap.git /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/leap Obtaining modepy from git+https://github.com/inducer/modepy.git#egg=modepy (from -r /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/mirgecom/requirements.txt (line 16)) Cloning https://github.com/inducer/modepy.git to ./modepy Running command git clone -q https://github.com/inducer/modepy.git /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/modepy Obtaining arraycontext from git+https://github.com/inducer/arraycontext.git#egg=arraycontext (from -r /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/mirgecom/requirements.txt (line 17)) Cloning https://github.com/inducer/arraycontext.git to ./arraycontext Running command git clone -q https://github.com/inducer/arraycontext.git /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/arraycontext Obtaining meshmode from git+https://github.com/inducer/meshmode.git#egg=meshmode (from -r /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/mirgecom/requirements.txt (line 18)) Cloning https://github.com/inducer/meshmode.git to ./meshmode Running command git clone -q https://github.com/inducer/meshmode.git /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/meshmode Obtaining grudge from git+https://github.com/inducer/grudge.git#egg=grudge (from -r /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/mirgecom/requirements.txt (line 19)) Cloning https://github.com/inducer/grudge.git to ./grudge Running command git clone -q https://github.com/inducer/grudge.git /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/grudge Obtaining pytato from git+https://github.com/inducer/pytato.git#egg=pytato (from -r /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/mirgecom/requirements.txt (line 20)) Cloning https://github.com/inducer/pytato.git to ./pytato Running command git clone -q https://github.com/inducer/pytato.git /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/pytato Obtaining pyrometheus from git+https://github.com/ecisneros8/pyrometheus.git#egg=pyrometheus (from -r /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/mirgecom/requirements.txt (line 21)) Cloning https://github.com/ecisneros8/pyrometheus.git to ./pyrometheus Running command git clone -q https://github.com/ecisneros8/pyrometheus.git /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/pyrometheus Obtaining logpyle from git+https://github.com/illinois-ceesd/logpyle.git#egg=logpyle (from -r /g/g17/mtcampbe/scratchl/CEESD/Experimental/test_nozzle/emirge/mirgecom/requirements.txt (line 22)) Cloning https://github.com/illinois-ceesd/logpyle.git to ./logpyle Running command git clone -q https://github.com/illinois-ceesd/logpyle.git /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/logpyle Collecting islpy Using cached islpy-2021.1.tar.gz (1.2 MB) Collecting mpi4py Using cached mpi4py-3.0.3.tar.gz (1.4 MB) Collecting numpy Using cached numpy-1.20.3.zip (7.8 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing wheel metadata ... error ERROR: Command errored out with exit status 1: command: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/bin/python3.9 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/tmp/tmpvqq1ghch cwd: /tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927 Complete output (229 lines): Running from numpy source directory. setup.py:485: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates run_build = parse_setuppy_commands() Processing numpy/random/_bounded_integers.pxd.in Processing numpy/random/_mt19937.pyx Processing numpy/random/_generator.pyx Processing numpy/random/_philox.pyx Processing numpy/random/_bounded_integers.pyx.in Processing numpy/random/_common.pyx Processing numpy/random/_sfc64.pyx Processing numpy/random/bit_generator.pyx Processing numpy/random/_pcg64.pyx Processing numpy/random/mtrand.pyx Cythonizing sources blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC creating /var/tmp/tmph8lhcjsw/var creating /var/tmp/tmph8lhcjsw/var/tmp creating /var/tmp/tmph8lhcjsw/var/tmp/tmph8lhcjsw compile options: '-MMD -MF /var/tmp/tmph8lhcjsw/file.c.d -c' mpicc: /var/tmp/tmph8lhcjsw/file.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found libraries mkl_rt not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE blis_info: libraries blis not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_info: libraries openblas not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' customize Gnu95FCompiler Found executable /usr/tce/packages/gcc/gcc-8.3.1/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: include_dirs = ['/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] libraries = ['tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] FOUND: include_dirs = ['/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] libraries = ['tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] non-existing path in 'numpy/distutils': 'site.cfg' lapack_opt_info: lapack_mkl_info: libraries mkl_rt not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_lapack_info: libraries openblas not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_clapack_info: libraries openblas,lapack not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE flame_info: libraries flame not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE atlas_3_10_threads_info: Setting PTATLAS=ATLAS libraries lapack_atlas not found in /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib libraries tatlas,tatlas not found in /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib libraries lapack_atlas not found in /usr/local/lib64 libraries tatlas,tatlas not found in /usr/local/lib64 libraries lapack_atlas not found in /usr/local/lib libraries tatlas,tatlas not found in /usr/local/lib libraries lapack_atlas not found in /usr/lib64/atlas Setting PTATLAS=ATLAS get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: include_dirs = ['/usr/include'] language = f77 libraries = ['tatlas', 'tatlas', 'tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] FOUND: include_dirs = ['/usr/include'] language = f77 libraries = ['tatlas', 'tatlas', 'tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'define_macros' warnings.warn(msg) running dist_info running build_src build_src building py_modules sources creating build creating build/src.linux-ppc64le-3.9 creating build/src.linux-ppc64le-3.9/numpy creating build/src.linux-ppc64le-3.9/numpy/distutils building library "npymath" sources /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found Traceback (most recent call last): File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 280, in main() File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 263, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 133, in prepare_metadata_for_build_wheel return hook(metadata_directory, config_settings) File "/tmp/pip-build-env-uqra6i2a/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 157, in prepare_metadata_for_build_wheel self.run_setup() File "/tmp/pip-build-env-uqra6i2a/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 248, in run_setup super(_BuildMetaLegacyBackend, File "/tmp/pip-build-env-uqra6i2a/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 142, in run_setup exec(compile(code, __file__, 'exec'), locals()) File "setup.py", line 513, in setup_package() File "setup.py", line 505, in setup_package setup(**metadata) File "/tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927/numpy/distutils/core.py", line 169, in setup return old_setup(**new_attr) File "/tmp/pip-build-env-uqra6i2a/overlay/lib/python3.9/site-packages/setuptools/__init__.py", line 165, in setup return distutils.core.setup(**attrs) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/core.py", line 148, in setup dist.run_commands() File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/tmp/pip-build-env-uqra6i2a/overlay/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 31, in run egg_info.run() File "/tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927/numpy/distutils/command/egg_info.py", line 24, in run self.run_command("build_src") File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927/numpy/distutils/command/build_src.py", line 144, in run self.build_sources() File "/tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927/numpy/distutils/command/build_src.py", line 155, in build_sources self.build_library_sources(*libname_info) File "/tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927/numpy/distutils/command/build_src.py", line 288, in build_library_sources sources = self.generate_sources(sources, (lib_name, build_info)) File "/tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927/numpy/distutils/command/build_src.py", line 378, in generate_sources source = func(extension, build_dir) File "numpy/core/setup.py", line 676, in get_mathlib_info raise RuntimeError("Broken toolchain: cannot link a simple C program") RuntimeError: Broken toolchain: cannot link a simple C program ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/f3/1f/fe9459e39335e7d0e372b5e5dcd60f4381d3d1b42f0b9c8222102ff29ded/numpy-1.20.3.zip#sha256=e55185e51b18d788e49fe8305fd73ef4470596b33fc2c1ceb304566b99c71a69 (from https://pypi.org/simple/numpy/) (requires-python:>=3.7). Command errored out with exit status 1: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/bin/python3.9 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/tmp/tmpvqq1ghch Check the logs for full command output. Using cached numpy-1.20.2.zip (7.8 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing wheel metadata ... error ERROR: Command errored out with exit status 1: command: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/bin/python3.9 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/tmp/tmprkbl0nzj cwd: /tmp/pip-install-lspqirn2/numpy_8774f002cfe249e497a54bdb1a1112de Complete output (229 lines): Running from numpy source directory. setup.py:485: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates run_build = parse_setuppy_commands() Processing numpy/random/_bounded_integers.pxd.in Processing numpy/random/_mt19937.pyx Processing numpy/random/_generator.pyx Processing numpy/random/_philox.pyx Processing numpy/random/_bounded_integers.pyx.in Processing numpy/random/_common.pyx Processing numpy/random/_sfc64.pyx Processing numpy/random/bit_generator.pyx Processing numpy/random/_pcg64.pyx Processing numpy/random/mtrand.pyx Cythonizing sources blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC creating /var/tmp/tmpagu4iecr/var creating /var/tmp/tmpagu4iecr/var/tmp creating /var/tmp/tmpagu4iecr/var/tmp/tmpagu4iecr compile options: '-MMD -MF /var/tmp/tmpagu4iecr/file.c.d -c' mpicc: /var/tmp/tmpagu4iecr/file.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found libraries mkl_rt not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE blis_info: libraries blis not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_info: libraries openblas not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' customize Gnu95FCompiler Found executable /usr/tce/packages/gcc/gcc-8.3.1/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: include_dirs = ['/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] libraries = ['tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] FOUND: include_dirs = ['/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] libraries = ['tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] non-existing path in 'numpy/distutils': 'site.cfg' lapack_opt_info: lapack_mkl_info: libraries mkl_rt not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_lapack_info: libraries openblas not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_clapack_info: libraries openblas,lapack not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE flame_info: libraries flame not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE atlas_3_10_threads_info: Setting PTATLAS=ATLAS libraries lapack_atlas not found in /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib libraries tatlas,tatlas not found in /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib libraries lapack_atlas not found in /usr/local/lib64 libraries tatlas,tatlas not found in /usr/local/lib64 libraries lapack_atlas not found in /usr/local/lib libraries tatlas,tatlas not found in /usr/local/lib libraries lapack_atlas not found in /usr/lib64/atlas Setting PTATLAS=ATLAS get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: include_dirs = ['/usr/include'] language = f77 libraries = ['tatlas', 'tatlas', 'tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] FOUND: include_dirs = ['/usr/include'] language = f77 libraries = ['tatlas', 'tatlas', 'tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'define_macros' warnings.warn(msg) running dist_info running build_src build_src building py_modules sources creating build creating build/src.linux-ppc64le-3.9 creating build/src.linux-ppc64le-3.9/numpy creating build/src.linux-ppc64le-3.9/numpy/distutils building library "npymath" sources /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found Traceback (most recent call last): File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 280, in main() File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 263, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 133, in prepare_metadata_for_build_wheel return hook(metadata_directory, config_settings) File "/tmp/pip-build-env-q3u5wto1/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 157, in prepare_metadata_for_build_wheel self.run_setup() File "/tmp/pip-build-env-q3u5wto1/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 248, in run_setup super(_BuildMetaLegacyBackend, File "/tmp/pip-build-env-q3u5wto1/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 142, in run_setup exec(compile(code, __file__, 'exec'), locals()) File "setup.py", line 513, in setup_package() File "setup.py", line 505, in setup_package setup(**metadata) File "/tmp/pip-install-lspqirn2/numpy_8774f002cfe249e497a54bdb1a1112de/numpy/distutils/core.py", line 169, in setup return old_setup(**new_attr) File "/tmp/pip-build-env-q3u5wto1/overlay/lib/python3.9/site-packages/setuptools/__init__.py", line 165, in setup return distutils.core.setup(**attrs) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/core.py", line 148, in setup dist.run_commands() File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/tmp/pip-build-env-q3u5wto1/overlay/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 31, in run egg_info.run() File "/tmp/pip-install-lspqirn2/numpy_8774f002cfe249e497a54bdb1a1112de/numpy/distutils/command/egg_info.py", line 24, in run self.run_command("build_src") File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/tmp/pip-install-lspqirn2/numpy_8774f002cfe249e497a54bdb1a1112de/numpy/distutils/command/build_src.py", line 144, in run self.build_sources() File "/tmp/pip-install-lspqirn2/numpy_8774f002cfe249e497a54bdb1a1112de/numpy/distutils/command/build_src.py", line 155, in build_sources self.build_library_sources(*libname_info) File "/tmp/pip-install-lspqirn2/numpy_8774f002cfe249e497a54bdb1a1112de/numpy/distutils/command/build_src.py", line 288, in build_library_sources sources = self.generate_sources(sources, (lib_name, build_info)) File "/tmp/pip-install-lspqirn2/numpy_8774f002cfe249e497a54bdb1a1112de/numpy/distutils/command/build_src.py", line 378, in generate_sources source = func(extension, build_dir) File "numpy/core/setup.py", line 676, in get_mathlib_info raise RuntimeError("Broken toolchain: cannot link a simple C program") RuntimeError: Broken toolchain: cannot link a simple C program ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/82/a8/1e0f86ae3f13f7ce260e9f782764c16559917f24382c74edfb52149897de/numpy-1.20.2.zip#sha256=878922bf5ad7550aa044aa9301d417e2d3ae50f0f577de92051d739ac6096cee (from https://pypi.org/simple/numpy/) (requires-python:>=3.7). Command errored out with exit status 1: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/bin/python3.9 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/tmp/tmprkbl0nzj Check the logs for full command output. Using cached numpy-1.20.1.zip (7.8 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing wheel metadata ... error ERROR: Command errored out with exit status 1: command: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/bin/python3.9 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/tmp/tmp9mmy6vfw cwd: /tmp/pip-install-lspqirn2/numpy_f3368cf46e99439185558700e5995a10 Complete output (229 lines): Running from numpy source directory. setup.py:485: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates run_build = parse_setuppy_commands() Processing numpy/random/_bounded_integers.pxd.in Processing numpy/random/_mt19937.pyx Processing numpy/random/_generator.pyx Processing numpy/random/_philox.pyx Processing numpy/random/_bounded_integers.pyx.in Processing numpy/random/_common.pyx Processing numpy/random/_sfc64.pyx Processing numpy/random/bit_generator.pyx Processing numpy/random/_pcg64.pyx Processing numpy/random/mtrand.pyx Cythonizing sources blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC creating /var/tmp/tmpmj5u_p4b/var creating /var/tmp/tmpmj5u_p4b/var/tmp creating /var/tmp/tmpmj5u_p4b/var/tmp/tmpmj5u_p4b compile options: '-MMD -MF /var/tmp/tmpmj5u_p4b/file.c.d -c' mpicc: /var/tmp/tmpmj5u_p4b/file.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found libraries mkl_rt not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE blis_info: libraries blis not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_info: libraries openblas not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' customize Gnu95FCompiler Found executable /usr/tce/packages/gcc/gcc-8.3.1/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: include_dirs = ['/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] libraries = ['tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] FOUND: include_dirs = ['/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] libraries = ['tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] non-existing path in 'numpy/distutils': 'site.cfg' lapack_opt_info: lapack_mkl_info: libraries mkl_rt not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_lapack_info: libraries openblas not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_clapack_info: libraries openblas,lapack not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE flame_info: libraries flame not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE atlas_3_10_threads_info: Setting PTATLAS=ATLAS libraries lapack_atlas not found in /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib libraries tatlas,tatlas not found in /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib libraries lapack_atlas not found in /usr/local/lib64 libraries tatlas,tatlas not found in /usr/local/lib64 libraries lapack_atlas not found in /usr/local/lib libraries tatlas,tatlas not found in /usr/local/lib libraries lapack_atlas not found in /usr/lib64/atlas Setting PTATLAS=ATLAS get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: include_dirs = ['/usr/include'] language = f77 libraries = ['tatlas', 'tatlas', 'tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] FOUND: include_dirs = ['/usr/include'] language = f77 libraries = ['tatlas', 'tatlas', 'tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'define_macros' warnings.warn(msg) running dist_info running build_src build_src building py_modules sources creating build creating build/src.linux-ppc64le-3.9 creating build/src.linux-ppc64le-3.9/numpy creating build/src.linux-ppc64le-3.9/numpy/distutils building library "npymath" sources /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found Traceback (most recent call last): File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 280, in main() File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 263, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 133, in prepare_metadata_for_build_wheel return hook(metadata_directory, config_settings) File "/tmp/pip-build-env-h60vu4ur/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 157, in prepare_metadata_for_build_wheel self.run_setup() File "/tmp/pip-build-env-h60vu4ur/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 248, in run_setup super(_BuildMetaLegacyBackend, File "/tmp/pip-build-env-h60vu4ur/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 142, in run_setup exec(compile(code, __file__, 'exec'), locals()) File "setup.py", line 513, in setup_package() File "setup.py", line 505, in setup_package setup(**metadata) File "/tmp/pip-install-lspqirn2/numpy_f3368cf46e99439185558700e5995a10/numpy/distutils/core.py", line 169, in setup return old_setup(**new_attr) File "/tmp/pip-build-env-h60vu4ur/overlay/lib/python3.9/site-packages/setuptools/__init__.py", line 165, in setup return distutils.core.setup(**attrs) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/core.py", line 148, in setup dist.run_commands() File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/tmp/pip-build-env-h60vu4ur/overlay/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 31, in run egg_info.run() File "/tmp/pip-install-lspqirn2/numpy_f3368cf46e99439185558700e5995a10/numpy/distutils/command/egg_info.py", line 24, in run self.run_command("build_src") File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/tmp/pip-install-lspqirn2/numpy_f3368cf46e99439185558700e5995a10/numpy/distutils/command/build_src.py", line 144, in run self.build_sources() File "/tmp/pip-install-lspqirn2/numpy_f3368cf46e99439185558700e5995a10/numpy/distutils/command/build_src.py", line 155, in build_sources self.build_library_sources(*libname_info) File "/tmp/pip-install-lspqirn2/numpy_f3368cf46e99439185558700e5995a10/numpy/distutils/command/build_src.py", line 288, in build_library_sources sources = self.generate_sources(sources, (lib_name, build_info)) File "/tmp/pip-install-lspqirn2/numpy_f3368cf46e99439185558700e5995a10/numpy/distutils/command/build_src.py", line 378, in generate_sources source = func(extension, build_dir) File "numpy/core/setup.py", line 676, in get_mathlib_info raise RuntimeError("Broken toolchain: cannot link a simple C program") RuntimeError: Broken toolchain: cannot link a simple C program ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/d2/48/f445be426ccd9b2fb64155ac6730c7212358882e589cd3717477d739d9ff/numpy-1.20.1.zip#sha256=3bc63486a870294683980d76ec1e3efc786295ae00128f9ea38e2c6e74d5a60a (from https://pypi.org/simple/numpy/) (requires-python:>=3.7). Command errored out with exit status 1: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/bin/python3.9 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/tmp/tmp9mmy6vfw Check the logs for full command output. Using cached numpy-1.20.0.zip (8.0 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing wheel metadata ... error ERROR: Command errored out with exit status 1: command: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/bin/python3.9 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/tmp/tmpjyme2dat cwd: /tmp/pip-install-lspqirn2/numpy_9c73daa3fc3c4914aecc12c06c2e9ed1 Complete output (229 lines): Running from numpy source directory. setup.py:485: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates run_build = parse_setuppy_commands() Processing numpy/random/_bounded_integers.pxd.in Processing numpy/random/_mt19937.pyx Processing numpy/random/_generator.pyx Processing numpy/random/_philox.pyx Processing numpy/random/_bounded_integers.pyx.in Processing numpy/random/_common.pyx Processing numpy/random/_sfc64.pyx Processing numpy/random/bit_generator.pyx Processing numpy/random/_pcg64.pyx Processing numpy/random/mtrand.pyx Cythonizing sources blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC creating /var/tmp/tmpuxd3dvcu/var creating /var/tmp/tmpuxd3dvcu/var/tmp creating /var/tmp/tmpuxd3dvcu/var/tmp/tmpuxd3dvcu compile options: '-MMD -MF /var/tmp/tmpuxd3dvcu/file.c.d -c' mpicc: /var/tmp/tmpuxd3dvcu/file.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found libraries mkl_rt not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE blis_info: libraries blis not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_info: libraries openblas not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' customize Gnu95FCompiler Found executable /usr/tce/packages/gcc/gcc-8.3.1/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: include_dirs = ['/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] libraries = ['tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] FOUND: include_dirs = ['/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] libraries = ['tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] non-existing path in 'numpy/distutils': 'site.cfg' lapack_opt_info: lapack_mkl_info: libraries mkl_rt not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_lapack_info: libraries openblas not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_clapack_info: libraries openblas,lapack not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE flame_info: libraries flame not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE atlas_3_10_threads_info: Setting PTATLAS=ATLAS libraries lapack_atlas not found in /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib libraries tatlas,tatlas not found in /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib libraries lapack_atlas not found in /usr/local/lib64 libraries tatlas,tatlas not found in /usr/local/lib64 libraries lapack_atlas not found in /usr/local/lib libraries tatlas,tatlas not found in /usr/local/lib libraries lapack_atlas not found in /usr/lib64/atlas Setting PTATLAS=ATLAS get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: include_dirs = ['/usr/include'] language = f77 libraries = ['tatlas', 'tatlas', 'tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] FOUND: include_dirs = ['/usr/include'] language = f77 libraries = ['tatlas', 'tatlas', 'tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'define_macros' warnings.warn(msg) running dist_info running build_src build_src building py_modules sources creating build creating build/src.linux-ppc64le-3.9 creating build/src.linux-ppc64le-3.9/numpy creating build/src.linux-ppc64le-3.9/numpy/distutils building library "npymath" sources /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found Traceback (most recent call last): File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 280, in main() File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 263, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 133, in prepare_metadata_for_build_wheel return hook(metadata_directory, config_settings) File "/tmp/pip-build-env-7qoyrws4/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 157, in prepare_metadata_for_build_wheel self.run_setup() File "/tmp/pip-build-env-7qoyrws4/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 248, in run_setup super(_BuildMetaLegacyBackend, File "/tmp/pip-build-env-7qoyrws4/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 142, in run_setup exec(compile(code, __file__, 'exec'), locals()) File "setup.py", line 513, in setup_package() File "setup.py", line 505, in setup_package setup(**metadata) File "/tmp/pip-install-lspqirn2/numpy_9c73daa3fc3c4914aecc12c06c2e9ed1/numpy/distutils/core.py", line 169, in setup return old_setup(**new_attr) File "/tmp/pip-build-env-7qoyrws4/overlay/lib/python3.9/site-packages/setuptools/__init__.py", line 165, in setup return distutils.core.setup(**attrs) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/core.py", line 148, in setup dist.run_commands() File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/tmp/pip-build-env-7qoyrws4/overlay/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 31, in run egg_info.run() File "/tmp/pip-install-lspqirn2/numpy_9c73daa3fc3c4914aecc12c06c2e9ed1/numpy/distutils/command/egg_info.py", line 24, in run self.run_command("build_src") File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/tmp/pip-install-lspqirn2/numpy_9c73daa3fc3c4914aecc12c06c2e9ed1/numpy/distutils/command/build_src.py", line 144, in run self.build_sources() File "/tmp/pip-install-lspqirn2/numpy_9c73daa3fc3c4914aecc12c06c2e9ed1/numpy/distutils/command/build_src.py", line 155, in build_sources self.build_library_sources(*libname_info) File "/tmp/pip-install-lspqirn2/numpy_9c73daa3fc3c4914aecc12c06c2e9ed1/numpy/distutils/command/build_src.py", line 288, in build_library_sources sources = self.generate_sources(sources, (lib_name, build_info)) File "/tmp/pip-install-lspqirn2/numpy_9c73daa3fc3c4914aecc12c06c2e9ed1/numpy/distutils/command/build_src.py", line 378, in generate_sources source = func(extension, build_dir) File "numpy/core/setup.py", line 676, in get_mathlib_info raise RuntimeError("Broken toolchain: cannot link a simple C program") RuntimeError: Broken toolchain: cannot link a simple C program ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/c3/97/fd507e48f8c7cab73a9f002e52e15983b5636b4ac6cf69b83ae240324b44/numpy-1.20.0.zip#sha256=3d8233c03f116d068d5365fed4477f2947c7229582dad81e5953088989294cec (from https://pypi.org/simple/numpy/) (requires-python:>=3.7). Command errored out with exit status 1: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/bin/python3.9 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/tmp/tmpjyme2dat Check the logs for full command output. Using cached numpy-1.19.5.zip (7.3 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing wheel metadata ... error ERROR: Command errored out with exit status 1: command: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/bin/python3.9 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/tmp/tmp7cj05ddk cwd: /tmp/pip-install-lspqirn2/numpy_d28f0dd1514f40faa9ec1b06c5592886 Complete output (229 lines): Running from numpy source directory. setup.py:480: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates run_build = parse_setuppy_commands() Processing numpy/random/_bounded_integers.pxd.in Processing numpy/random/_mt19937.pyx Processing numpy/random/_generator.pyx Processing numpy/random/_philox.pyx Processing numpy/random/_bounded_integers.pyx.in Processing numpy/random/_common.pyx Processing numpy/random/_sfc64.pyx Processing numpy/random/bit_generator.pyx Processing numpy/random/_pcg64.pyx Processing numpy/random/mtrand.pyx Cythonizing sources blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC creating /var/tmp/tmp1r2ujw59/var creating /var/tmp/tmp1r2ujw59/var/tmp creating /var/tmp/tmp1r2ujw59/var/tmp/tmp1r2ujw59 compile options: '-MMD -MF /var/tmp/tmp1r2ujw59/file.c.d -c' mpicc: /var/tmp/tmp1r2ujw59/file.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found libraries mkl_rt not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE blis_info: libraries blis not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_info: libraries openblas not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler Found executable /usr/tce/packages/gcc/gcc-8.3.1/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: include_dirs = ['/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] libraries = ['tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] FOUND: include_dirs = ['/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] libraries = ['tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] non-existing path in 'numpy/distutils': 'site.cfg' lapack_opt_info: lapack_mkl_info: libraries mkl_rt not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_lapack_info: libraries openblas not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_clapack_info: libraries openblas,lapack not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE flame_info: libraries flame not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE atlas_3_10_threads_info: Setting PTATLAS=ATLAS libraries lapack_atlas not found in /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib libraries tatlas,tatlas not found in /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib libraries lapack_atlas not found in /usr/local/lib64 libraries tatlas,tatlas not found in /usr/local/lib64 libraries lapack_atlas not found in /usr/local/lib libraries tatlas,tatlas not found in /usr/local/lib libraries lapack_atlas not found in /usr/lib64/atlas Setting PTATLAS=ATLAS get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor']' customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: include_dirs = ['/usr/include'] language = f77 libraries = ['tatlas', 'tatlas', 'tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] FOUND: include_dirs = ['/usr/include'] language = f77 libraries = ['tatlas', 'tatlas', 'tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'define_macros' warnings.warn(msg) running dist_info running build_src build_src building py_modules sources creating build creating build/src.linux-ppc64le-3.9 creating build/src.linux-ppc64le-3.9/numpy creating build/src.linux-ppc64le-3.9/numpy/distutils building library "npymath" sources /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found Traceback (most recent call last): File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 280, in main() File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 263, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 133, in prepare_metadata_for_build_wheel return hook(metadata_directory, config_settings) File "/tmp/pip-build-env-wolk3qsg/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 157, in prepare_metadata_for_build_wheel self.run_setup() File "/tmp/pip-build-env-wolk3qsg/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 248, in run_setup super(_BuildMetaLegacyBackend, File "/tmp/pip-build-env-wolk3qsg/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 142, in run_setup exec(compile(code, __file__, 'exec'), locals()) File "setup.py", line 508, in setup_package() File "setup.py", line 500, in setup_package setup(**metadata) File "/tmp/pip-install-lspqirn2/numpy_d28f0dd1514f40faa9ec1b06c5592886/numpy/distutils/core.py", line 169, in setup return old_setup(**new_attr) File "/tmp/pip-build-env-wolk3qsg/overlay/lib/python3.9/site-packages/setuptools/__init__.py", line 165, in setup return distutils.core.setup(**attrs) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/core.py", line 148, in setup dist.run_commands() File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/tmp/pip-build-env-wolk3qsg/overlay/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 31, in run egg_info.run() File "/tmp/pip-install-lspqirn2/numpy_d28f0dd1514f40faa9ec1b06c5592886/numpy/distutils/command/egg_info.py", line 24, in run self.run_command("build_src") File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/tmp/pip-install-lspqirn2/numpy_d28f0dd1514f40faa9ec1b06c5592886/numpy/distutils/command/build_src.py", line 144, in run self.build_sources() File "/tmp/pip-install-lspqirn2/numpy_d28f0dd1514f40faa9ec1b06c5592886/numpy/distutils/command/build_src.py", line 155, in build_sources self.build_library_sources(*libname_info) File "/tmp/pip-install-lspqirn2/numpy_d28f0dd1514f40faa9ec1b06c5592886/numpy/distutils/command/build_src.py", line 288, in build_library_sources sources = self.generate_sources(sources, (lib_name, build_info)) File "/tmp/pip-install-lspqirn2/numpy_d28f0dd1514f40faa9ec1b06c5592886/numpy/distutils/command/build_src.py", line 378, in generate_sources source = func(extension, build_dir) File "numpy/core/setup.py", line 663, in get_mathlib_info raise RuntimeError("Broken toolchain: cannot link a simple C program") RuntimeError: Broken toolchain: cannot link a simple C program ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/51/60/3f0fe5b7675a461d96b9d6729beecd3532565743278a9c3fe6dd09697fa7/numpy-1.19.5.zip#sha256=a76f502430dd98d7546e1ea2250a7360c065a5fdea52b2dffe8ae7180909b6f4 (from https://pypi.org/simple/numpy/) (requires-python:>=3.6). Command errored out with exit status 1: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/bin/python3.9 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/tmp/tmp7cj05ddk Check the logs for full command output. Collecting numpy Using cached numpy-1.20.3.zip (7.8 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing wheel metadata ... error ERROR: Command errored out with exit status 1: command: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/bin/python3.9 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/tmp/tmpvqq1ghch cwd: /tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927 Complete output (229 lines): Running from numpy source directory. setup.py:485: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates run_build = parse_setuppy_commands() Processing numpy/random/_bounded_integers.pxd.in Processing numpy/random/_mt19937.pyx Processing numpy/random/_generator.pyx Processing numpy/random/_philox.pyx Processing numpy/random/_bounded_integers.pyx.in Processing numpy/random/_common.pyx Processing numpy/random/_sfc64.pyx Processing numpy/random/bit_generator.pyx Processing numpy/random/_pcg64.pyx Processing numpy/random/mtrand.pyx Cythonizing sources blas_opt_info: blas_mkl_info: customize UnixCCompiler C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC creating /var/tmp/tmph8lhcjsw/var creating /var/tmp/tmph8lhcjsw/var/tmp creating /var/tmp/tmph8lhcjsw/var/tmp/tmph8lhcjsw compile options: '-MMD -MF /var/tmp/tmph8lhcjsw/file.c.d -c' mpicc: /var/tmp/tmph8lhcjsw/file.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found libraries mkl_rt not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE blis_info: libraries blis not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_info: libraries openblas not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE atlas_3_10_blas_threads_info: Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' customize Gnu95FCompiler Found executable /usr/tce/packages/gcc/gcc-8.3.1/bin/gfortran customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: include_dirs = ['/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] libraries = ['tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] FOUND: include_dirs = ['/usr/include'] language = c define_macros = [('HAVE_CBLAS', None)] libraries = ['tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] non-existing path in 'numpy/distutils': 'site.cfg' lapack_opt_info: lapack_mkl_info: libraries mkl_rt not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_lapack_info: libraries openblas not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE openblas_clapack_info: libraries openblas,lapack not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE flame_info: libraries flame not found in ['/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib', '/usr/local/lib64', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/'] NOT AVAILABLE atlas_3_10_threads_info: Setting PTATLAS=ATLAS libraries lapack_atlas not found in /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib libraries tatlas,tatlas not found in /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib libraries lapack_atlas not found in /usr/local/lib64 libraries tatlas,tatlas not found in /usr/local/lib64 libraries lapack_atlas not found in /usr/local/lib libraries tatlas,tatlas not found in /usr/local/lib libraries lapack_atlas not found in /usr/lib64/atlas Setting PTATLAS=ATLAS get_default_fcompiler: matching types: '['gnu95', 'intel', 'lahey', 'pg', 'nv', 'absoft', 'nag', 'vast', 'compaq', 'intele', 'intelem', 'gnu', 'g95', 'pathf95', 'nagfor', 'fujitsu']' customize Gnu95FCompiler customize Gnu95FCompiler customize Gnu95FCompiler using config compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found failure. removing: _configtest.c _configtest.o Status: 255 Output: compiling '_configtest.c': /* This file is generated from numpy/distutils/system_info.py */ void ATL_buildinfo(void); int main(void) { ATL_buildinfo(); return 0; } C compiler: mpicc -Wno-unused-result -Wsign-compare -DNDEBUG -fwrapv -O3 -Wall -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -mcpu=power8 -fPIC -O3 -isystem /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/include -fPIC compile options: '-c' mpicc: _configtest.c Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS Setting PTATLAS=ATLAS FOUND: include_dirs = ['/usr/include'] language = f77 libraries = ['tatlas', 'tatlas', 'tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] FOUND: include_dirs = ['/usr/include'] language = f77 libraries = ['tatlas', 'tatlas', 'tatlas', 'tatlas'] library_dirs = ['/usr/lib64/atlas'] /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'define_macros' warnings.warn(msg) running dist_info running build_src build_src building py_modules sources creating build creating build/src.linux-ppc64le-3.9 creating build/src.linux-ppc64le-3.9/numpy creating build/src.linux-ppc64le-3.9/numpy/distutils building library "npymath" sources /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/envs/production.nozzle/bin/mpicc: line 296: powerpc64le-conda-linux-gnu-cc: command not found Traceback (most recent call last): File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 280, in main() File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 263, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 133, in prepare_metadata_for_build_wheel return hook(metadata_directory, config_settings) File "/tmp/pip-build-env-uqra6i2a/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 157, in prepare_metadata_for_build_wheel self.run_setup() File "/tmp/pip-build-env-uqra6i2a/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 248, in run_setup super(_BuildMetaLegacyBackend, File "/tmp/pip-build-env-uqra6i2a/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 142, in run_setup exec(compile(code, __file__, 'exec'), locals()) File "setup.py", line 513, in setup_package() File "setup.py", line 505, in setup_package setup(**metadata) File "/tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927/numpy/distutils/core.py", line 169, in setup return old_setup(**new_attr) File "/tmp/pip-build-env-uqra6i2a/overlay/lib/python3.9/site-packages/setuptools/__init__.py", line 165, in setup return distutils.core.setup(**attrs) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/core.py", line 148, in setup dist.run_commands() File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/tmp/pip-build-env-uqra6i2a/overlay/lib/python3.9/site-packages/setuptools/command/dist_info.py", line 31, in run egg_info.run() File "/tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927/numpy/distutils/command/egg_info.py", line 24, in run self.run_command("build_src") File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927/numpy/distutils/command/build_src.py", line 144, in run self.build_sources() File "/tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927/numpy/distutils/command/build_src.py", line 155, in build_sources self.build_library_sources(*libname_info) File "/tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927/numpy/distutils/command/build_src.py", line 288, in build_library_sources sources = self.generate_sources(sources, (lib_name, build_info)) File "/tmp/pip-install-lspqirn2/numpy_faaa2ed57b4a48b6b4a695e300f95927/numpy/distutils/command/build_src.py", line 378, in generate_sources source = func(extension, build_dir) File "numpy/core/setup.py", line 676, in get_mathlib_info raise RuntimeError("Broken toolchain: cannot link a simple C program") RuntimeError: Broken toolchain: cannot link a simple C program ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/f3/1f/fe9459e39335e7d0e372b5e5dcd60f4381d3d1b42f0b9c8222102ff29ded/numpy-1.20.3.zip#sha256=e55185e51b18d788e49fe8305fd73ef4470596b33fc2c1ceb304566b99c71a69 (from https://pypi.org/simple/numpy/) (requires-python:>=3.7). Command errored out with exit status 1: /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/bin/python3.9 /p/gpfs1/mtcampbe/CEESD/Experimental/test_nozzle/emirge/miniforge3/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py prepare_metadata_for_build_wheel /var/tmp/tmpvqq1ghch Check the logs for full command output. Using cached numpy-1.20.2.zip (7.8 MB) Installing build dependencies ... done Getting requirements to build wheel ... done Preparing wheel metadata ... error ERROR: Command errored out with exit status 1: ---------------------------------------- WARNING: Discarding https://files.pythonhosted.org/packages/e1/f7/d227e2ce1437f2d317456cde97f488f93d45870851ea997b80d44bb033e9/pyopencl-2013.1.tar.gz#sha256=5c1360a27bdc12ca9868158cc8eb3daa93d0efb05ad6f27f47a8bb4e4c9c5403 (from https://pypi.org/simple/pyopencl/). Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output. INFO: pip is looking at multiple versions of meshmode to determine which version is compatible with other requirements. This could take a while. INFO: pip is looking at multiple versions of arraycontext to determine which version is compatible with other requirements. This could take a while. INFO: pip is looking at multiple versions of modepy to determine which version is compatible with other requirements. This could take a while. INFO: pip is looking at multiple versions of leap to determine which version is compatible with other requirements. This could take a while. INFO: pip is looking at multiple versions of dagrt to determine which version is compatible with other requirements. This could take a while. INFO: pip is looking at multiple versions of loopy to determine which version is compatible with other requirements. This could take a while. INFO: pip is looking at multiple versions of pymbolic to determine which version is compatible with other requirements. This could take a while. ERROR: Could not find a version that satisfies the requirement pyopencl>=2013.1 (from grudge) (from versions: 0.90, 0.90.1, 0.90.2, 0.90.3, 0.90.4, 0.91, 0.91.1, 0.91.2, 0.91.3, 0.91.4, 0.91.5, 0.92, 2011.1b0, 2011.1b2, 2011.1b3, 2011.1, 2011.1.1, 2011.1.2, 2011.2, 2012.1, 2013.1, 2013.2, 2014.1, 2015.1, 2015.2, 2015.2.1, 2015.2.2, 2015.2.3, 2015.2.4, 2016.1, 2016.2, 2016.2.1, 2017.1, 2017.1.1, 2017.2, 2017.2.1, 2017.2.2, 2018.1, 2018.1.1, 2018.2, 2018.2.1, 2018.2.2, 2018.2.3, 2018.2.5, 2019.1, 2019.1.1, 2019.1.2, 2020.1, 2020.2, 2020.2.1, 2020.2.2, 2020.3, 2020.3.1, 2021.1, 2021.1.1, 2021.1.2, 2021.1.3, 2021.1.4, 2021.1.5, 2021.1.6, 2021.2, 2021.2.1, 2021.2.2) ERROR: No matching distribution found for pyopencl>=2013.1 [mtcampbe@lassen709:emirge]$ ls LICENSE arraycontext grudge install-spack.sh leap makezip.sh mirgecom pymbolic version.sh Miniforge3-Linux-ppc64le.sh config install-conda.sh install-src-package.sh logpyle meshmode modepy pyrometheus README.md dagrt install-pip-dependencies.sh install.sh loopy miniforge3 pull-packages.sh pytato [mtcampbe@lassen709:emirge]$ ```

[MTCam]

This commit appears to install properly on Lassen (f997bf3)

[inducer]

(Side note @MTCam: For piles of shell output like that, it's usually better to create and link a gist, https://gist.github.com/)

[matthiasdiener]

(Side note @MTCam: For piles of shell output like that, it's usually better to create and link a gist, https://gist.github.com/)

You can also wrap the output in <details> ```[...]```</details>

[inducer]

Another follow-up question: Do users need to apply any of these gymnastics to get the environment activated? If so, should we add that to the mirgecom machine docs?

[matthiasdiener]

Another follow-up question: Do users need to apply any of these gymnastics to get the environment activated? If so, should we add that to the mirgecom machine docs?

I haven't seen reports of that failing yet, but it is certainly possible that we need smth like that. We could possibly add that to our activate_env.sh