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ilyakichigin / DOPseq_analyzer

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region_dnacopy.R performance update needed #7

Closed amakunin closed 8 years ago

amakunin commented 8 years ago

Number of positions is sometimes(?) underestimated by 1. Position coverage definition is needed. Need to output region size. Convert ln to log10. Need logscale calculation for output table - for region consistency with plot. Excessive "chr" or "Chromosome" on plot, chromosome order is not natural. Plot name should include sample name, target genome and analysis name.

amakunin commented 8 years ago

Most issues fixed. Exception: plot chromosome order and title - need to edit DNAcopy.plot function.