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im3sanger / dndscv

dN/dS methods to quantify selection in cancer and somatic evolution
GNU General Public License v3.0
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No qglobal_cv in "sel_cv" #71

Closed WangKang-Leo closed 3 years ago

WangKang-Leo commented 3 years ago

Hi

Very interesting tool to filter driver genes. But when I ran the dndscv() successfully, I did not find the qglobal_cv in "sel_cv". Do you know why?

Kang

im3sanger commented 3 years ago

Hello Kang,

Thank you for your interest in dndscv. This is the correct output when running dndscv without indels. In the absence of indels, only substitutions are used and the global p-values and q-values are shown in the "pallsubs_cv" and "qallsubs_cv" columns, respectively.

Best wishes, Inigo