Closed parvathisudha closed 1 year ago
Hi Parvathi,
Thanks for your interest in dndscv. Could you send me a small example dataset that reproduces this error (through this chat or by email)? I have never come across it before.
Best, Inigo
Hi,
Thanks for your reply. I am attaching variants for one of the samples to this email. I have a few more samples like this. Please let me know if you find any problem in this file.
Thanks Parvathi.
On Thu, Mar 2, 2023 at 10:08 PM Inigo Martincorena @.***> wrote:
Hi Parvathi,
Thanks for your interest in dndscv. Could you send me a small example dataset that reproduces this error (through this chat or by email)? I have never come across it before.
Best, Inigo
— Reply to this email directly, view it on GitHub https://github.com/im3sanger/dndscv/issues/86#issuecomment-1452174542, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADDGAL2XXWBIOOV5GXKRVGDW2DEJFANCNFSM6AAAAAAVMRWNYA . You are receiving this because you authored the thread.Message ID: @.***>
--
Thanks
Parvathi Sudha.
SampleID chr pos ref alt 0661-619_4410453_T 1 839489 G A 0661-619_4410453_T 1 839499 A T 0661-619_4410453_T 1 988598 A G 0661-619_4410453_T 1 1384749 C G 0661-619_4410453_T 1 1548572 A C 0661-619_4410453_T 1 1612560 G T 0661-619_4410453_T 1 1928114 A T 0661-619_4410453_T 1 2659557 A G 0661-619_4410453_T 1 2677361 T A 0661-619_4410453_T 1 2695843 T C 0661-619_4410453_T 1 2849107 A G 0661-619_4410453_T 1 2852084 A G 0661-619_4410453_T 1 2852092 T C 0661-619_4410453_T 1 2866866 T G 0661-619_4410453_T 1 2880595 G A 0661-619_4410453_T 1 3163341 A G 0661-619_4410453_T 1 3287837 C G 0661-619_4410453_T 1 3299300 A G 0661-619_4410453_T 1 3428319 A G 0661-619_4410453_T 1 3524700 G A 0661-619_4410453_T 1 3583340 G C 0661-619_4410453_T 1 3722904 A G 0661-619_4410453_T 1 3729861 G A 0661-619_4410453_T 1 3813025 A G 0661-619_4410453_T 1 4369080 A G 0661-619_4410453_T 1 4455174 C G 0661-619_4410453_T 1 4516779 C T 0661-619_4410453_T 1 5203784 A G 0661-619_4410453_T 1 5740844 G A 0661-619_4410453_T 1 6307819 T A 0661-619_4410453_T 1 6714516 A T 0661-619_4410453_T 1 6834156 T A 0661-619_4410453_T 1 7156130 T A 0661-619_4410453_T 1 7746615 C T 0661-619_4410453_T 1 7877148 A G 0661-619_4410453_T 1 8456797 T A 0661-619_4410453_T 1 8498770 T C 0661-619_4410453_T 1 8974600 C T 0661-619_4410453_T 1 9624608 G A 0661-619_4410453_T 1 9969672 A G 0661-619_4410453_T 1 10188959 A T 0661-619_4410453_T 1 10223555 T G 0661-619_4410453_T 1 10871567 T C 0661-619_4410453_T 1 11903310 C G 0661-619_4410453_T 1 12203737 T A 0661-619_4410453_T 1 13006045 G A 0661-619_4410453_T 1 13070265 T C 0661-619_4410453_T 1 13224737 G C 0661-619_4410453_T 1 13243400 C T 0661-619_4410453_T 1 13251521 G A 0661-619_4410453_T 1 13260152 C A 0661-619_4410453_T 1 13334006 A G 0661-619_4410453_T 1 13432421 G C 0661-619_4410453_T 1 13461564 T C 0661-619_4410453_T 1 14152728 A G 0661-619_4410453_T 1 14177798 T G 0661-619_4410453_T 1 15027903 G A 0661-619_4410453_T 1 15367840 C T 0661-619_4410453_T 1 15369130 A T 0661-619_4410453_T 1 15667219 T A 0661-619_4410453_T 1 15790503 A C 0661-619_4410453_T 1 16426583 T A 0661-619_4410453_T 1 16532015 T A 0661-619_4410453_T 1 16551624 C T 0661-619_4410453_T 1 16551626 C T 0661-619_4410453_T 1 16551736 C G 0661-619_4410453_T 1 16557798 G A 0661-619_4410453_T 1 16561095 C A 0661-619_4410453_T 1 16561428 G A 0661-619_4410453_T 1 16610876 T C 0661-619_4410453_T 1 16626269 A C 0661-619_4410453_T 1 16644329 G T 0661-619_4410453_T 1 16644788 T G 0661-619_4410453_T 1 16755215 G C 0661-619_4410453_T 1 16760375 T C 0661-619_4410453_T 1 16850197 G A 0661-619_4410453_T 1 16860028 G A 0661-619_4410453_T 1 16862959 G A 0661-619_4410453_T 1 16868017 G A 0661-619_4410453_T 1 17450178 A C 0661-619_4410453_T 1 17674732 C T 0661-619_4410453_T 1 19351979 A C 0661-619_4410453_T 1 19495302 T A 0661-619_4410453_T 1 21020735 A C 0661-619_4410453_T 1 21041008 G A 0661-619_4410453_T 1 21341034 A C 0661-619_4410453_T 1 21484082 T C 0661-619_4410453_T 1 21588771 T G 0661-619_4410453_T 1 21903053 C G 0661-619_4410453_T 1 22005826 G A 0661-619_4410453_T 1 22005840 G A 0661-619_4410453_T 1 22231211 A C 0661-619_4410453_T 1 22681197 C T 0661-619_4410453_T 1 23585035 T C 0661-619_4410453_T 1 23758264 T A 0661-619_4410453_T 1 23758268 T A 0661-619_4410453_T 1 23837673 T G 0661-619_4410453_T 1 24159736 T G 0661-619_4410453_T 1 24159737 G T 0661-619_4410453_T 1 24219309 C T 0661-619_4410453_T 1 25091472 C T 0661-619_4410453_T 1 25178007 G A 0661-619_4410453_T 1 25214741 A T 0661-619_4410453_T 1 25679978 T C 0661-619_4410453_T 1 26282398 A T 0661-619_4410453_T 1 26811571 C T 0661-619_4410453_T 1 26951932 C T 0661-619_4410453_T 1 27107482 C A 0661-619_4410453_T 1 27985262 C A 0661-619_4410453_T 1 28860363 A T 0661-619_4410453_T 1 29581739 C T 0661-619_4410453_T 1 29931761 C A 0661-619_4410453_T 1 30191452 G A 0661-619_4410453_T 1 30478728 A C 0661-619_4410453_T 1 30818871 C G 0661-619_4410453_T 1 30832799 G A 0661-619_4410453_T 1 31449998 A T 0661-619_4410453_T 1 32061900 T C 0661-619_4410453_T 1 32198058 A G 0661-619_4410453_T 1 32208265 G C 0661-619_4410453_T 1 32827786 T G 0661-619_4410453_T 1 32841175 T A 0661-619_4410453_T 1 32933271 G T 0661-619_4410453_T 1 33148658 G A 0661-619_4410453_T 1 35267859 A C 0661-619_4410453_T 1 35268545 G C 0661-619_4410453_T 1 36014798 A G 0661-619_4410453_T 1 36022933 C A 0661-619_4410453_T 1 36295238 A G 0661-619_4410453_T 1 36736168 G A 0661-619_4410453_T 1 37332944 A G 0661-619_4410453_T 1 37685383 T C 0661-619_4410453_T 1 37695192 T A 0661-619_4410453_T 1 37863219 A T 0661-619_4410453_T 1 38005756 A C 0661-619_4410453_T 1 38039805 G A 0661-619_4410453_T 1 38434064 G A 0661-619_4410453_T 1 38460222 G A 0661-619_4410453_T 1 38571775 C A 0661-619_4410453_T 1 38683534 G T 0661-619_4410453_T 1 38865862 G A 0661-619_4410453_T 1 38874331 A T 0661-619_4410453_T 1 38875643 G T 0661-619_4410453_T 1 38931541 A G 0661-619_4410453_T 1 39381378 T G 0661-619_4410453_T 1 39393196 A T 0661-619_4410453_T 1 39418500 A C 0661-619_4410453_T 1 39557055 A G 0661-619_4410453_T 1 39885764 G A 0661-619_4410453_T 1 40224585 T C 0661-619_4410453_T 1 40224586 T C 0661-619_4410453_T 1 40784021 T C 0661-619_4410453_T 1 40784023 T G 0661-619_4410453_T 1 41562611 C T 0661-619_4410453_T 1 41953067 T C 0661-619_4410453_T 1 42722801 T A 0661-619_4410453_T 1 42722802 A C 0661-619_4410453_T 1 42722803 C T 0661-619_4410453_T 1 43085914 G A 0661-619_4410453_T 1 43589697 A G 0661-619_4410453_T 1 43871765 A G 0661-619_4410453_T 1 44078437 C T 0661-619_4410453_T 1 44301507 T C 0661-619_4410453_T 1 44335776 C A 0661-619_4410453_T 1 44433326 T C 0661-619_4410453_T 1 44704801 T A 0661-619_4410453_T 1 44799568 G A 0661-619_4410453_T 1 44876683 C G 0661-619_4410453_T 1 45979437 T G 0661-619_4410453_T 1 46145374 A T 0661-619_4410453_T 1 46267203 A C 0661-619_4410453_T 1 46795953 T C 0661-619_4410453_T 1 47066194 C T 0661-619_4410453_T 1 47116694 A G 0661-619_4410453_T 1 47184490 C T 0661-619_4410453_T 1 47289080 A C 0661-619_4410453_T 1 47385065 T C 0661-619_4410453_T 1 47588415 T G 0661-619_4410453_T 1 47725240 C T 0661-619_4410453_T 1 49145558 G A 0661-619_4410453_T 1 50382552 C A 0661-619_4410453_T 1 50670380 G A 0661-619_4410453_T 1 51430584 A T 0661-619_4410453_T 1 51517070 T G 0661-619_4410453_T 1 52693619 A G 0661-619_4410453_T 1 52786188 T C 0661-619_4410453_T 1 52981064 C T 0661-619_4410453_T 1 52987011 T A 0661-619_4410453_T 1 53601248 C T 0661-619_4410453_T 1 54130752 G A 0661-619_4410453_T 1 54148976 T A 0661-619_4410453_T 1 54651812 G C 0661-619_4410453_T 1 55318426 G A 0661-619_4410453_T 1 56005544 T A 0661-619_4410453_T 1 56184761 T A 0661-619_4410453_T 1 56221998 A G 0661-619_4410453_T 1 56655282 T A 0661-619_4410453_T 1 56985220 G A 0661-619_4410453_T 1 57295228 C G 0661-619_4410453_T 1 57820836 A G 0661-619_4410453_T 1 57886293 G T 0661-619_4410453_T 1 57925816 G A 0661-619_4410453_T 1 59282234 T G 0661-619_4410453_T 1 59624891 T G 0661-619_4410453_T 1 60115008 C A 0661-619_4410453_T 1 60215886 T G 0661-619_4410453_T 1 62123762 G C 0661-619_4410453_T 1 62197413 A T 0661-619_4410453_T 1 62201489 T G 0661-619_4410453_T 1 62204770 G A 0661-619_4410453_T 1 62273342 C T 0661-619_4410453_T 1 62324608 A T 0661-619_4410453_T 1 63023052 C A 0661-619_4410453_T 1 64635400 T G 0661-619_4410453_T 1 65053049 A G 0661-619_4410453_T 1 65207535 T C 0661-619_4410453_T 1 65307303 T A 0661-619_4410453_T 1 65545727 T G 0661-619_4410453_T 1 65982322 C T 0661-619_4410453_T 1 66510711 G A 0661-619_4410453_T 1 66848110 G A 0661-619_4410453_T 1 66884943 A C 0661-619_4410453_T 1 67072890 G C 0661-619_4410453_T 1 67840126 G A 0661-619_4410453_T 1 70078828 A G 0661-619_4410453_T 1 70791372 G T 0661-619_4410453_T 1 71039664 A G 0661-619_4410453_T 1 71064593 T G 0661-619_4410453_T 1 71232681 C T 0661-619_4410453_T 1 71292747 A C 0661-619_4410453_T 1 71474731 A C 0661-619_4410453_T 1 71489100 G A 0661-619_4410453_T 1 71928442 A G 0661-619_4410453_T 1 71928444 A G 0661-619_4410453_T 1 72212287 G T 0661-619_4410453_T 1 72329868 C T 0661-619_4410453_T 1 72431667 G A 0661-619_4410453_T 1 72435832 C T 0661-619_4410453_T 1 72495979 A C 0661-619_4410453_T 1 72715720 T C 0661-619_4410453_T 1 73324913 C G 0661-619_4410453_T 1 73332244 A T 0661-619_4410453_T 1 73370019 G A 0661-619_4410453_T 1 73414564 C T 0661-619_4410453_T 1 74043259 C A 0661-619_4410453_T 1 74085336 A T 0661-619_4410453_T 1 74086061 G C 0661-619_4410453_T 1 74280392 T A 0661-619_4410453_T 1 74508414 T C 0661-619_4410453_T 1 75267426 A G 0661-619_4410453_T 1 75431415 G T 0661-619_4410453_T 1 75659148 G T 0661-619_4410453_T 1 76209483 G A 0661-619_4410453_T 1 77010565 C A 0661-619_4410453_T 1 78249520 A G 0661-619_4410453_T 1 78771372 C A 0661-619_4410453_T 1 78802211 A C 0661-619_4410453_T 1 78819148 T C 0661-619_4410453_T 1 78875735 C A 0661-619_4410453_T 1 79096287 T C 0661-619_4410453_T 1 79319916 T G 0661-619_4410453_T 1 79603495 T G 0661-619_4410453_T 1 80231242 G A 0661-619_4410453_T 1 80329310 T C 0661-619_4410453_T 1 80513330 A G 0661-619_4410453_T 1 80781299 T A 0661-619_4410453_T 1 81571034 A G 0661-619_4410453_T 1 81766848 A G 0661-619_4410453_T 1 81784747 T A 0661-619_4410453_T 1 81815540 C T 0661-619_4410453_T 1 81884678 G A 0661-619_4410453_T 1 81989674 A T 0661-619_4410453_T 1 82056099 T C 0661-619_4410453_T 1 82092215 G C 0661-619_4410453_T 1 82379778 C G 0661-619_4410453_T 1 82482027 T G 0661-619_4410453_T 1 82528103 T C 0661-619_4410453_T 1 82792467 T A 0661-619_4410453_T 1 83022497 C T 0661-619_4410453_T 1 83322158 T C 0661-619_4410453_T 1 83446760 G A 0661-619_4410453_T 1 83711466 C T 0661-619_4410453_T 1 84784742 G T 0661-619_4410453_T 1 85656212 T G 0661-619_4410453_T 1 86490913 A T 0661-619_4410453_T 1 86662591 T C 0661-619_4410453_T 1 86954045 A T 0661-619_4410453_T 1 87307130 T C 0661-619_4410453_T 1 87546686 T C 0661-619_4410453_T 1 87999883 C T 0661-619_4410453_T 1 88894296 C T 0661-619_4410453_T 1 89394209 C T 0661-619_4410453_T 1 89590586 G A 0661-619_4410453_T 1 90348899 C A 0661-619_4410453_T 1 90516444 A G 0661-619_4410453_T 1 90600860 A T 0661-619_4410453_T 1 90688799 T C 0661-619_4410453_T 1 90727015 A T 0661-619_4410453_T 1 90864470 C T 0661-619_4410453_T 1 91272381 A G 0661-619_4410453_T 1 91468779 G A 0661-619_4410453_T 1 91986943 T C 0661-619_4410453_T 1 92116871 A T 0661-619_4410453_T 1 92539560 A C 0661-619_4410453_T 1 92572962 C G 0661-619_4410453_T 1 92651867 G A 0661-619_4410453_T 1 92979177 C G 0661-619_4410453_T 1 94577099 T C 0661-619_4410453_T 1 94757272 A G 0661-619_4410453_T 1 94757273 A C 0661-619_4410453_T 1 95126129 T A 0661-619_4410453_T 1 95265002 G C 0661-619_4410453_T 1 95494658 T C 0661-619_4410453_T 1 96291082 T C 0661-619_4410453_T 1 96316703 C A 0661-619_4410453_T 1 96810099 A T 0661-619_4410453_T 1 96929171 T G 0661-619_4410453_T 1 97285240 G A 0661-619_4410453_T 1 97545393 T C 0661-619_4410453_T 1 98691937 A T 0661-619_4410453_T 1 98763441 A T 0661-619_4410453_T 1 99435683 A C 0661-619_4410453_T 1 100048448 G A 0661-619_4410453_T 1 100189352 A T 0661-619_4410453_T 1 100382390 A T 0661-619_4410453_T 1 100563186 A G 0661-619_4410453_T 1 100741847 G A 0661-619_4410453_T 1 100912894 T A 0661-619_4410453_T 1 101470513 C A 0661-619_4410453_T 1 101999716 T C 0661-619_4410453_T 1 102026175 C G 0661-619_4410453_T 1 102136052 C T 0661-619_4410453_T 1 102645585 T C 0661-619_4410453_T 1 102945253 T C 0661-619_4410453_T 1 102985356 T C 0661-619_4410453_T 1 103008636 T G 0661-619_4410453_T 1 103179265 G A 0661-619_4410453_T 1 103314881 T C 0661-619_4410453_T 1 103438624 C A 0661-619_4410453_T 1 104164459 C T 0661-619_4410453_T 1 104514528 T A 0661-619_4410453_T 1 104835469 C T 0661-619_4410453_T 1 105018263 A G 0661-619_4410453_T 1 105242393 T A 0661-619_4410453_T 1 105242397 T A 0661-619_4410453_T 1 106085898 A C 0661-619_4410453_T 1 106218467 A T 0661-619_4410453_T 1 106246797 C T 0661-619_4410453_T 1 106347331 G T 0661-619_4410453_T 1 106827165 C A 0661-619_4410453_T 1 107012049 T C 0661-619_4410453_T 1 107035210 G A 0661-619_4410453_T 1 107240279 T A 0661-619_4410453_T 1 107653388 G A 0661-619_4410453_T 1 107798807 T C 0661-619_4410453_T 1 108489185 C T 0661-619_4410453_T 1 108819923 A C 0661-619_4410453_T 1 108900256 A T 0661-619_4410453_T 1 109177020 T G 0661-619_4410453_T 1 109486700 G A 0661-619_4410453_T 1 111560810 C T 0661-619_4410453_T 1 113210540 C T 0661-619_4410453_T 1 115366742 C T 0661-619_4410453_T 1 115408994 C T 0661-619_4410453_T 1 115613756 C A 0661-619_4410453_T 1 116768351 C T 0661-619_4410453_T 1 117205159 G T 0661-619_4410453_T 1 117704600 A G 0661-619_4410453_T 1 117829059 G C 0661-619_4410453_T 1 117879472 A G 0661-619_4410453_T 1 118368009 T A 0661-619_4410453_T 1 118387299 T C 0661-619_4410453_T 1 118387301 T C 0661-619_4410453_T 1 118534445 T G 0661-619_4410453_T 1 119343897 A G 0661-619_4410453_T 1 119380908 A C 0661-619_4410453_T 1 119481398 C T 0661-619_4410453_T 1 119500571 G A 0661-619_4410453_T 1 119776532 A C 0661-619_4410453_T 1 120933113 G T 0661-619_4410453_T 1 120934278 A G 0661-619_4410453_T 1 120945042 A G 0661-619_4410453_T 1 121033656 C G 0661-619_4410453_T 1 121184136 T C 0661-619_4410453_T 1 121644956 T A 0661-619_4410453_T 1 121772233 T C 0661-619_4410453_T 1 121879945 G A 0661-619_4410453_T 1 122130673 G A 0661-619_4410453_T 1 122433083 G C 0661-619_4410453_T 1 122433596 C A 0661-619_4410453_T 1 122517795 G T 0661-619_4410453_T 1 122519404 G T 0661-619_4410453_T 1 122521871 C T 0661-619_4410453_T 1 122521919 A G 0661-619_4410453_T 1 122521920 G T 0661-619_4410453_T 1 122524876 A T 0661-619_4410453_T 1 122529587 T C 0661-619_4410453_T 1 122532056 C T 0661-619_4410453_T 1 122546255 G T 0661-619_4410453_T 1 122550163 A C 0661-619_4410453_T 1 122551186 C T 0661-619_4410453_T 1 122554735 A G 0661-619_4410453_T 1 122587834 T C 0661-619_4410453_T 1 122603860 G A 0661-619_4410453_T 1 122645481 G C 0661-619_4410453_T 1 122662055 A C 0661-619_4410453_T 1 122684867 A T 0661-619_4410453_T 1 122689117 T C 0661-619_4410453_T 1 122699263 C G 0661-619_4410453_T 1 122723467 T A 0661-619_4410453_T 1 122807256 T C 0661-619_4410453_T 1 122833439 A G 0661-619_4410453_T 1 122844152 C A 0661-619_4410453_T 1 122844372 C A 0661-619_4410453_T 1 122844404 G T 0661-619_4410453_T 1 122896989 C T 0661-619_4410453_T 1 122922588 G T 0661-619_4410453_T 1 122960755 G A 0661-619_4410453_T 1 122962713 T G 0661-619_4410453_T 1 122977153 C T 0661-619_4410453_T 1 122977178 G C 0661-619_4410453_T 1 122985612 T A 0661-619_4410453_T 1 122986576 T A 0661-619_4410453_T 1 123023085 C G 0661-619_4410453_T 1 123048723 G C 0661-619_4410453_T 1 123083212 A T 0661-619_4410453_T 1 123114234 C A 0661-619_4410453_T 1 123119719 C T 0661-619_4410453_T 1 123119753 A C 0661-619_4410453_T 1 123125142 T C 0661-619_4410453_T 1 123158674 G A 0661-619_4410453_T 1 123171451 C G 0661-619_4410453_T 1 123201756 T C 0661-619_4410453_T 1 123229868 A C 0661-619_4410453_T 1 123244450 A G 0661-619_4410453_T 1 123268214 C T 0661-619_4410453_T 1 123268258 A T 0661-619_4410453_T 1 123269422 C G 0661-619_4410453_T 1 123271593 A T 0661-619_4410453_T 1 123273404 G A 0661-619_4410453_T 1 123300343 C G 0661-619_4410453_T 1 123307649 G A 0661-619_4410453_T 1 123328944 G C 0661-619_4410453_T 1 123350129 G C 0661-619_4410453_T 1 123355146 T A 0661-619_4410453_T 1 123355185 A G 0661-619_4410453_T 1 123355753 C T 0661-619_4410453_T 1 123355930 C A 0661-619_4410453_T 1 123389061 C T 0661-619_4410453_T 1 123406703 C A 0661-619_4410453_T 1 123445307 G T 0661-619_4410453_T 1 123447114 A T 0661-619_4410453_T 1 123447130 G C 0661-619_4410453_T 1 123492664 C G 0661-619_4410453_T 1 123634212 G T 0661-619_4410453_T 1 123635965 C A 0661-619_4410453_T 1 123642790 G T 0661-619_4410453_T 1 123646099 A G 0661-619_4410453_T 1 123669622 T A 0661-619_4410453_T 1 123681044 C A 0661-619_4410453_T 1 123711761 G C 0661-619_4410453_T 1 123712891 T C 0661-619_4410453_T 1 123716014 A T 0661-619_4410453_T 1 123785801 G T 0661-619_4410453_T 1 123791368 G C 0661-619_4410453_T 1 123797752 G T 0661-619_4410453_T 1 123800372 C A 0661-619_4410453_T 1 123801086 C T 0661-619_4410453_T 1 123808539 C G 0661-619_4410453_T 1 123820312 C G 0661-619_4410453_T 1 123880664 G T 0661-619_4410453_T 1 123909542 G C 0661-619_4410453_T 1 123921798 A T 0661-619_4410453_T 1 123952478 T C 0661-619_4410453_T 1 123959125 T G 0661-619_4410453_T 1 123965764 A C 0661-619_4410453_T 1 123978980 G A 0661-619_4410453_T 1 123993043 T C 0661-619_4410453_T 1 123995078 G C 0661-619_4410453_T 1 124015946 C A 0661-619_4410453_T 1 124044125 T G 0661-619_4410453_T 1 124058482 T C 0661-619_4410453_T 1 124067683 G A 0661-619_4410453_T 1 124096933 G T 0661-619_4410453_T 1 124155744 A G 0661-619_4410453_T 1 124165455 C A 0661-619_4410453_T 1 124183358 T C 0661-619_4410453_T 1 124194822 A G 0661-619_4410453_T 1 124206347 T C 0661-619_4410453_T 1 124212090 A G 0661-619_4410453_T 1 124218111 G T 0661-619_4410453_T 1 124221698 A T 0661-619_4410453_T 1 124224733 A G 0661-619_4410453_T 1 124246623 G T 0661-619_4410453_T 1 124295541 C T 0661-619_4410453_T 1 124295576 G A 0661-619_4410453_T 1 124336286 G C 0661-619_4410453_T 1 124375222 A C 0661-619_4410453_T 1 124435284 A T 0661-619_4410453_T 1 124438708 T C 0661-619_4410453_T 1 124460117 T A 0661-619_4410453_T 1 124540688 C A 0661-619_4410453_T 1 124549990 G T 0661-619_4410453_T 1 124550038 T A 0661-619_4410453_T 1 124561893 T A 0661-619_4410453_T 1 124612742 T A 0661-619_4410453_T 1 124632405 C A 0661-619_4410453_T 1 124649245 G T 0661-619_4410453_T 1 124665006 T C 0661-619_4410453_T 1 124671527 A C 0661-619_4410453_T 1 124690355 T A 0661-619_4410453_T 1 124750082 G C 0661-619_4410453_T 1 124750803 T A 0661-619_4410453_T 1 124752690 T C 0661-619_4410453_T 1 124766640 C G 0661-619_4410453_T 1 124766658 T A 0661-619_4410453_T 1 124771248 T G 0661-619_4410453_T 1 124777608 C G 0661-619_4410453_T 1 124780968 C A 0661-619_4410453_T 1 124903473 C A 0661-619_4410453_T 1 124919790 T G 0661-619_4410453_T 1 124921921 T C 0661-619_4410453_T 1 124924085 C G 0661-619_4410453_T 1 125016243 C A 0661-619_4410453_T 1 125035568 T A 0661-619_4410453_T 1 125051623 T C 0661-619_4410453_T 1 125086104 G T 0661-619_4410453_T 1 125108249 G C 0661-619_4410453_T 1 125177967 A T 0661-619_4410453_T 1 143188858 G T 0661-619_4410453_T 1 143189042 T C 0661-619_4410453_T 1 143198157 C G 0661-619_4410453_T 1 143198179 C T 0661-619_4410453_T 1 143198941 T C 0661-619_4410453_T 1 143234517 A G 0661-619_4410453_T 1 143244414 T G 0661-619_4410453_T 1 143244632 C T 0661-619_4410453_T 1 143244891 C T 0661-619_4410453_T 1 143244926 C T 0661-619_4410453_T 1 143244941 T G 0661-619_4410453_T 1 143249325 C T 0661-619_4410453_T 1 143294716 G A 0661-619_4410453_T 1 143296254 G T 0661-619_4410453_T 1 143729574 A C 0661-619_4410453_T 1 143743854 T A 0661-619_4410453_T 1 143751344 C T 0661-619_4410453_T 1 143752028 C T 0661-619_4410453_T 1 143786763 T C 0661-619_4410453_T 1 143843235 G T 0661-619_4410453_T 1 143865012 C T 0661-619_4410453_T 1 144965698 T C 0661-619_4410453_T 1 145227113 A T 0661-619_4410453_T 1 145455450 T C 0661-619_4410453_T 1 145493991 C A 0661-619_4410453_T 1 145842998 A T 0661-619_4410453_T 1 146114988 T A 0661-619_4410453_T 1 146134415 G C 0661-619_4410453_T 1 147141816 T C 0661-619_4410453_T 1 147148015 T C 0661-619_4410453_T 1 147322038 T A 0661-619_4410453_T 1 147519473 C T 0661-619_4410453_T 1 147939943 G A 0661-619_4410453_T 1 147979677 T C 0661-619_4410453_T 1 147990880 C T 0661-619_4410453_T 1 148044693 C T 0661-619_4410453_T 1 148062652 G T 0661-619_4410453_T 1 148095013 A G 0661-619_4410453_T 1 148193871 A G 0661-619_4410453_T 1 148249599 T G 0661-619_4410453_T 1 148286071 A T 0661-619_4410453_T 1 148286920 A G 0661-619_4410453_T 1 148586409 C T 0661-619_4410453_T 1 148997744 G A 0661-619_4410453_T 1 149049665 C T 0661-619_4410453_T 1 149528955 G A 0661-619_4410453_T 1 149811444 C G 0661-619_4410453_T 1 149816160 A C 0661-619_4410453_T 1 149816194 C T 0661-619_4410453_T 1 149872755 T A 0661-619_4410453_T 1 149872759 T A 0661-619_4410453_T 1 149874071 T C 0661-619_4410453_T 1 149994606 A C 0661-619_4410453_T 1 150062457 C T 0661-619_4410453_T 1 150152686 A T 0661-619_4410453_T 1 150388522 C T 0661-619_4410453_T 1 150464471 C T 0661-619_4410453_T 1 151595939 A G 0661-619_4410453_T 1 151650022 G T 0661-619_4410453_T 1 151704822 A T 0661-619_4410453_T 1 152142443 C T 0661-619_4410453_T 1 152463904 T A 0661-619_4410453_T 1 152463906 T A 0661-619_4410453_T 1 152517792 T C 0661-619_4410453_T 1 152554893 C T 0661-619_4410453_T 1 152736134 G T 0661-619_4410453_T 1 152968332 C T 0661-619_4410453_T 1 153084528 C G 0661-619_4410453_T 1 153261225 A C 0661-619_4410453_T 1 153373784 C G 0661-619_4410453_T 1 153898005 A C 0661-619_4410453_T 1 154103350 T C 0661-619_4410453_T 1 154174407 T C 0661-619_4410453_T 1 155497639 G A 0661-619_4410453_T 1 155604558 C A 0661-619_4410453_T 1 155939780 T A 0661-619_4410453_T 1 156225308 T A 0661-619_4410453_T 1 156776468 G T 0661-619_4410453_T 1 157507338 C T 0661-619_4410453_T 1 157771447 T A 0661-619_4410453_T 1 157808972 T A 0661-619_4410453_T 1 157883461 A G 0661-619_4410453_T 1 158767472 T C 0661-619_4410453_T 1 158887073 T A 0661-619_4410453_T 1 158887074 A C 0661-619_4410453_T 1 158888302 C G 0661-619_4410453_T 1 158891138 T G 0661-619_4410453_T 1 158891667 T C 0661-619_4410453_T 1 159030485 G A 0661-619_4410453_T 1 159113387 C T 0661-619_4410453_T 1 159228156 G A 0661-619_4410453_T 1 159238389 A T 0661-619_4410453_T 1 160099090 T A 0661-619_4410453_T 1 160475878 G A 0661-619_4410453_T 1 160552601 C T 0661-619_4410453_T 1 161090600 T A 0661-619_4410453_T 1 161654144 C T 0661-619_4410453_T 1 161660957 C T 0661-619_4410453_T 1 161670997 T C 0661-619_4410453_T 1 162973279 T A 0661-619_4410453_T 1 163092634 T G 0661-619_4410453_T 1 163231817 C A 0661-619_4410453_T 1 163274200 G A 0661-619_4410453_T 1 163715522 T A 0661-619_4410453_T 1 164113278 A G 0661-619_4410453_T 1 164176673 C T 0661-619_4410453_T 1 164399517 C T 0661-619_4410453_T 1 164491412 A T 0661-619_4410453_T 1 164526420 C G 0661-619_4410453_T 1 164707428 A T 0661-619_4410453_T 1 164831167 C A 0661-619_4410453_T 1 165124968 C T 0661-619_4410453_T 1 165752252 A T 0661-619_4410453_T 1 165898266 G A 0661-619_4410453_T 1 166298723 C G 0661-619_4410453_T 1 166410195 C T 0661-619_4410453_T 1 166427523 C T 0661-619_4410453_T 1 168103441 A G 0661-619_4410453_T 1 168549932 A G 0661-619_4410453_T 1 168861057 A G 0661-619_4410453_T 1 168943508 A T 0661-619_4410453_T 1 169107460 G T 0661-619_4410453_T 1 169255144 G C 0661-619_4410453_T 1 169355270 T A 0661-619_4410453_T 1 169945042 G A 0661-619_4410453_T 1 170282002 G A 0661-619_4410453_T 1 170667298 G A 0661-619_4410453_T 1 171617605 C A 0661-619_4410453_T 1 171743525 C T 0661-619_4410453_T 1 171865527 A T 0661-619_4410453_T 1 172027617 C G 0661-619_4410453_T 1 172031559 A G 0661-619_4410453_T 1 172090206 G T 0661-619_4410453_T 1 172794908 T C 0661-619_4410453_T 1 172871727 T C 0661-619_4410453_T 1 173073251 T C 0661-619_4410453_T 1 173541688 A G 0661-619_4410453_T 1 173719118 A C 0661-619_4410453_T 1 173748536 G C 0661-619_4410453_T 1 173853249 T C 0661-619_4410453_T 1 173933669 T C 0661-619_4410453_T 1 173978784 T C 0661-619_4410453_T 1 174017283 G A 0661-619_4410453_T 1 174429752 T A 0661-619_4410453_T 1 175612959 A G 0661-619_4410453_T 1 176067215 C T 0661-619_4410453_T 1 176395896 A G 0661-619_4410453_T 1 178064899 A C 0661-619_4410453_T 1 178247048 C T 0661-619_4410453_T 1 178864375 C G 0661-619_4410453_T 1 179184794 C T 0661-619_4410453_T 1 179213061 A G 0661-619_4410453_T 1 179648382 A G 0661-619_4410453_T 1 180457795 T C 0661-619_4410453_T 1 181420794 C T 0661-619_4410453_T 1 181868608 C T 0661-619_4410453_T 1 182215247 C T 0661-619_4410453_T 1 182515553 A G 0661-619_4410453_T 1 182732272 T C 0661-619_4410453_T 1 183597145 C T 0661-619_4410453_T 1 183930573 T C 0661-619_4410453_T 1 184033198 G A 0661-619_4410453_T 1 184064218 A G 0661-619_4410453_T 1 184327905 C G 0661-619_4410453_T 1 184468013 A T 0661-619_4410453_T 1 185228169 G A 0661-619_4410453_T 1 185256569 G A 0661-619_4410453_T 1 185363152 A G 0661-619_4410453_T 1 185827120 C T 0661-619_4410453_T 1 186135694 C T 0661-619_4410453_T 1 186641514 A G 0661-619_4410453_T 1 186891112 A T 0661-619_4410453_T 1 187049554 G A 0661-619_4410453_T 1 187206446 C T 0661-619_4410453_T 1 187275351 G T 0661-619_4410453_T 1 187831162 C T 0661-619_4410453_T 1 187856093 T C 0661-619_4410453_T 1 187856131 T C 0661-619_4410453_T 1 187957995 T G 0661-619_4410453_T 1 187994436 T C 0661-619_4410453_T 1 188280012 T C 0661-619_4410453_T 1 188318612 T G 0661-619_4410453_T 1 188381742 A G 0661-619_4410453_T 1 188391738 A G 0661-619_4410453_T 1 188424974 C A 0661-619_4410453_T 1 188512627 A C 0661-619_4410453_T 1 188582316 T A 0661-619_4410453_T 1 188869423 A C 0661-619_4410453_T 1 189045525 T C 0661-619_4410453_T 1 189064188 T G 0661-619_4410453_T 1 189361366 T C 0661-619_4410453_T 1 189448323 G T 0661-619_4410453_T 1 189474434 T A 0661-619_4410453_T 1 189474436 T G 0661-619_4410453_T 1 190451907 C T 0661-619_4410453_T 1 190482268 A T 0661-619_4410453_T 1 190482287 G A 0661-619_4410453_T 1 190630582 G T 0661-619_4410453_T 1 190651192 C A 0661-619_4410453_T 1 190864086 T A 0661-619_4410453_T 1 190926842 A C 0661-619_4410453_T 1 191120046 C T 0661-619_4410453_T 1 191123838 T C 0661-619_4410453_T 1 191244694 T A 0661-619_4410453_T 1 191293687 A C 0661-619_4410453_T 1 191493092 C T 0661-619_4410453_T 1 191534617 A G 0661-619_4410453_T 1 191639012 C T 0661-619_4410453_T 1 192555139 C T 0661-619_4410453_T 1 192636377 C G 0661-619_4410453_T 1 192857743 T C 0661-619_4410453_T 1 193041493 T C 0661-619_4410453_T 1 193700504 A C 0661-619_4410453_T 1 193700505 C A 0661-619_4410453_T 1 194053998 G A 0661-619_4410453_T 1 194105748 G A 0661-619_4410453_T 1 194325472 G A 0661-619_4410453_T 1 195152163 T C 0661-619_4410453_T 1 195210151 A G 0661-619_4410453_T 1 195344738 T C 0661-619_4410453_T 1 195382097 T C 0661-619_4410453_T 1 195426646 T G 0661-619_4410453_T 1 195719863 T A 0661-619_4410453_T 1 196471435 G T 0661-619_4410453_T 1 196552512 A C 0661-619_4410453_T 1 196694952 A G 0661-619_4410453_T 1 196762987 A G 0661-619_4410453_T 1 196763950 G T 0661-619_4410453_T 1 196840538 C A 0661-619_4410453_T 1 196870581 A T 0661-619_4410453_T 1 196984227 T C 0661-619_4410453_T 1 197081321 C T 0661-619_4410453_T 1 197406580 T A 0661-619_4410453_T 1 197880173 T C 0661-619_4410453_T 1 197950463 G A 0661-619_4410453_T 1 197971542 T A 0661-619_4410453_T 1 198010090 G T 0661-619_4410453_T 1 199230150 G A 0661-619_4410453_T 1 199367532 T G 0661-619_4410453_T 1 199428766 T C 0661-619_4410453_T 1 199997937 A T 0661-619_4410453_T 1 201968882 C T 0661-619_4410453_T 1 202324251 A G 0661-619_4410453_T 1 202692739 C T 0661-619_4410453_T 1 203005978 C T 0661-619_4410453_T 1 203295900 T A 0661-619_4410453_T 1 203305820 C T 0661-619_4410453_T 1 203882916 A T 0661-619_4410453_T 1 204034631 A G 0661-619_4410453_T 1 204250722 G A 0661-619_4410453_T 1 204335180 C T 0661-619_4410453_T 1 204594689 G A 0661-619_4410453_T 1 204676000 C T 0661-619_4410453_T 1 205447749 G A 0661-619_4410453_T 1 206316253 T C 0661-619_4410453_T 1 206547224 C T 0661-619_4410453_T 1 206692858 G A 0661-619_4410453_T 1 206745613 T G 0661-619_4410453_T 1 206771300 T C 0661-619_4410453_T 1 207484126 C T 0661-619_4410453_T 1 207617604 T G 0661-619_4410453_T 1 208510958 A G 0661-619_4410453_T 1 208713227 C A 0661-619_4410453_T 1 209087881 C T 0661-619_4410453_T 1 209307167 A C 0661-619_4410453_T 1 209512390 G A 0661-619_4410453_T 1 210072363 T C 0661-619_4410453_T 1 210446613 T C 0661-619_4410453_T 1 211549387 G C 0661-619_4410453_T 1 211987318 C A 0661-619_4410453_T 1 212095710 C T 0661-619_4410453_T 1 212210697 T C 0661-619_4410453_T 1 212632594 A G 0661-619_4410453_T 1 212634118 G A 0661-619_4410453_T 1 213238749 C T 0661-619_4410453_T 1 213664060 G A 0661-619_4410453_T 1 213735070 C T 0661-619_4410453_T 1 214459475 T C 0661-619_4410453_T 1 214687378 G A 0661-619_4410453_T 1 214734319 C T 0661-619_4410453_T 1 214908336 T A 0661-619_4410453_T 1 214925291 T C 0661-619_4410453_T 1 214929219 G A 0661-619_4410453_T 1 215240198 G A 0661-619_4410453_T 1 215520795 G A 0661-619_4410453_T 1 215973659 T C 0661-619_4410453_T 1 215973661 T C 0661-619_4410453_T 1 216540861 T G 0661-619_4410453_T 1 216583098 C T 0661-619_4410453_T 1 216586584 T C 0661-619_4410453_T 1 216899913 G A 0661-619_4410453_T 1 217347448 A G 0661-619_4410453_T 1 217753163 T G 0661-619_4410453_T 1 218496643 G A 0661-619_4410453_T 1 218583677 C T 0661-619_4410453_T 1 218595692 T C 0661-619_4410453_T 1 218599289 G T 0661-619_4410453_T 1 218599337 A C 0661-619_4410453_T 1 218612891 C G 0661-619_4410453_T 1 218921347 C T 0661-619_4410453_T 1 219510249 C G 0661-619_4410453_T 1 219586670 C T 0661-619_4410453_T 1 219767907 G A 0661-619_4410453_T 1 220870862 A G 0661-619_4410453_T 1 221044260 T C 0661-619_4410453_T 1 221290837 G A 0661-619_4410453_T 1 221328980 G C 0661-619_4410453_T 1 221524707 A T 0661-619_4410453_T 1 222913754 A G 0661-619_4410453_T 1 223213931 A T 0661-619_4410453_T 1 224055353 C T 0661-619_4410453_T 1 224099746 C T 0661-619_4410453_T 1 224635354 C T 0661-619_4410453_T 1 224671731 A G 0661-619_4410453_T 1 226163584 T C 0661-619_4410453_T 1 226170164 G T 0661-619_4410453_T 1 226199377 T A 0661-619_4410453_T 1 226447508 T C 0661-619_4410453_T 1 226598041 A G 0661-619_4410453_T 1 226788868 A C 0661-619_4410453_T 1 227222306 T C 0661-619_4410453_T 1 227271920 A T 0661-619_4410453_T 1 227281548 C G 0661-619_4410453_T 1 227305329 T C 0661-619_4410453_T 1 227561899 G A 0661-619_4410453_T 1 228823119 C T 0661-619_4410453_T 1 228974749 G C 0661-619_4410453_T 1 229212832 A T 0661-619_4410453_T 1 229338389 T C 0661-619_4410453_T 1 230010392 T C 0661-619_4410453_T 1 230977691 C A 0661-619_4410453_T 1 231346361 A T 0661-619_4410453_T 1 231373513 A G 0661-619_4410453_T 1 231396033 T A 0661-619_4410453_T 1 232334907 C A 0661-619_4410453_T 1 232638210 C T 0661-619_4410453_T 1 232889713 T C 0661-619_4410453_T 1 233098706 A T 0661-619_4410453_T 1 233279932 C T 0661-619_4410453_T 1 233574952 G A 0661-619_4410453_T 1 233619941 A C 0661-619_4410453_T 1 233902916 C T 0661-619_4410453_T 1 234036187 C T 0661-619_4410453_T 1 234073341 G A 0661-619_4410453_T 1 234344433 A T 0661-619_4410453_T 1 234459767 G A 0661-619_4410453_T 1 234618949 A G 0661-619_4410453_T 1 234759383 T C 0661-619_4410453_T 1 234789658 C T 0661-619_4410453_T 1 235295252 G A 0661-619_4410453_T 1 236210868 G C 0661-619_4410453_T 1 236361820 C T 0661-619_4410453_T 1 236473409 G A 0661-619_4410453_T 1 236728726 T G 0661-619_4410453_T 1 237037493 C T 0661-619_4410453_T 1 237101318 A C 0661-619_4410453_T 1 237159293 A G 0661-619_4410453_T 1 237412267 C A 0661-619_4410453_T 1 237669163 A G 0661-619_4410453_T 1 237669164 T C 0661-619_4410453_T 1 237912868 G T 0661-619_4410453_T 1 238106376 T G 0661-619_4410453_T 1 238289422 C G 0661-619_4410453_T 1 238335826 G A 0661-619_4410453_T 1 238369251 A G 0661-619_4410453_T 1 238471087 A C 0661-619_4410453_T 1 238568445 T G 0661-619_4410453_T 1 238779207 T A 0661-619_4410453_T 1 238779208 G T 0661-619_4410453_T 1 238826130 T A 0661-619_4410453_T 1 238866002 T G 0661-619_4410453_T 1 238909169 T G 0661-619_4410453_T 1 238924262 T C 0661-619_4410453_T 1 238929691 T G 0661-619_4410453_T 1 239279038 A T 0661-619_4410453_T 1 239289459 C A 0661-619_4410453_T 1 239367644 T G 0661-619_4410453_T 1 239565916 T C 0661-619_4410453_T 1 239572668 G T 0661-619_4410453_T 1 239663688 A G 0661-619_4410453_T 1 239669002 T C 0661-619_4410453_T 1 239670253 C T 0661-619_4410453_T 1 239672516 T G 0661-619_4410453_T 1 239914286 T G 0661-619_4410453_T 1 239935471 T A 0661-619_4410453_T 1 240207551 T G 0661-619_4410453_T 1 240207668 A C 0661-619_4410453_T 1 240680876 A G 0661-619_4410453_T 1 240680890 T G 0661-619_4410453_T 1 240938824 G A 0661-619_4410453_T 1 241003710 G A 0661-619_4410453_T 1 241406402 T A 0661-619_4410453_T 1 241507617 C T 0661-619_4410453_T 1 241988583 T C 0661-619_4410453_T 1 242038947 G A 0661-619_4410453_T 1 242141210 C G 0661-619_4410453_T 1 242155551 C A 0661-619_4410453_T 1 242177945 C T 0661-619_4410453_T 1 242239255 C T 0661-619_4410453_T 1 242273600 C G 0661-619_4410453_T 1 242341248 T A 0661-619_4410453_T 1 242393639 T A 0661-619_4410453_T 1 242394887 T A 0661-619_4410453_T 1 242544773 G T 0661-619_4410453_T 1 244290034 A G 0661-619_4410453_T 1 244377129 A T 0661-619_4410453_T 1 244469735 C T 0661-619_4410453_T 1 244596778 A T 0661-619_4410453_T 1 244956230 G A 0661-619_4410453_T 1 245258196 C T 0661-619_4410453_T 1 245332104 C T 0661-619_4410453_T 1 245457588 C A 0661-619_4410453_T 1 245548760 A T 0661-619_4410453_T 1 245559995 G A 0661-619_4410453_T 1 245878985 T A 0661-619_4410453_T 1 245879979 T C 0661-619_4410453_T 1 246468729 A G 0661-619_4410453_T 1 246642134 T G 0661-619_4410453_T 1 246697700 G A 0661-619_4410453_T 1 246971600 G T 0661-619_4410453_T 1 247051269 C A 0661-619_4410453_T 1 247060741 C T 0661-619_4410453_T 1 247353325 G A 0661-619_4410453_T 1 247421942 T C 0661-619_4410453_T 1 247701081 C T 0661-619_4410453_T 1 247769640 G A 0661-619_4410453_T 1 248257097 G A 0661-619_4410453_T 1 248297820 T C 0661-619_4410453_T 1 248321256 G C 0661-619_4410453_T 1 248350806 C G 0661-619_4410453_T 1 248350807 G C 0661-619_4410453_T 1 248395415 A C 0661-619_4410453_T 1 248437688 C T 0661-619_4410453_T 1 248944954 C G 0661-619_4410453_T 1 248945400 G A 0661-619_4410453_T 2 725574 T C 0661-619_4410453_T 2 842360 T C 0661-619_4410453_T 2 909867 G C 0661-619_4410453_T 2 913033 G T 0661-619_4410453_T 2 1005052 A G 0661-619_4410453_T 2 1163327 G T 0661-619_4410453_T 2 1167442 T G 0661-619_4410453_T 2 1445789 A T 0661-619_4410453_T 2 1445793 C G 0661-619_4410453_T 2 1566350 G T 0661-619_4410453_T 2 1619437 C A 0661-619_4410453_T 2 1619510 G C 0661-619_4410453_T 2 2050007 T A 0661-619_4410453_T 2 2119856 A T 0661-619_4410453_T 2 2312456 T A 0661-619_4410453_T 2 2684751 A G 0661-619_4410453_T 2 2713349 C T 0661-619_4410453_T 2 2865950 G A 0661-619_4410453_T 2 2910660 T C 0661-619_4410453_T 2 2983386 A G 0661-619_4410453_T 2 3240455 G C 0661-619_4410453_T 2 3324194 C T 0661-619_4410453_T 2 3346569 A G 0661-619_4410453_T 2 3598505 C T 0661-619_4410453_T 2 3647591 G A 0661-619_4410453_T 2 3663348 G A 0661-619_4410453_T 2 3672012 G T 0661-619_4410453_T 2 3703501 A C 0661-619_4410453_T 2 3797895 C G 0661-619_4410453_T 2 3976665 T C 0661-619_4410453_T 2 4108626 A T 0661-619_4410453_T 2 4269363 T A 0661-619_4410453_T 2 4793770 A C 0661-619_4410453_T 2 4998473 G C 0661-619_4410453_T 2 5010774 C T 0661-619_4410453_T 2 5084525 G C 0661-619_4410453_T 2 5436369 G A 0661-619_4410453_T 2 5730735 G A 0661-619_4410453_T 2 5811990 G A 0661-619_4410453_T 2 5959304 G A 0661-619_4410453_T 2 6327524 A G 0661-619_4410453_T 2 6565149 G C 0661-619_4410453_T 2 6708167 T A 0661-619_4410453_T 2 7110829 T G 0661-619_4410453_T 2 7636949 C T 0661-619_4410453_T 2 7960794 G A 0661-619_4410453_T 2 8062726 G A 0661-619_4410453_T 2 8627051 A T 0661-619_4410453_T 2 9218709 C T 0661-619_4410453_T 2 10793123 C T 0661-619_4410453_T 2 11024244 G T 0661-619_4410453_T 2 11561207 C T 0661-619_4410453_T 2 11561363 T A 0661-619_4410453_T 2 12291430 T C 0661-619_4410453_T 2 12965643 T A 0661-619_4410453_T 2 13000339 A T 0661-619_4410453_T 2 13317521 A G 0661-619_4410453_T 2 13745508 C T 0661-619_4410453_T 2 14371467 A C 0661-619_4410453_T 2 14523875 A G 0661-619_4410453_T 2 14768599 C G 0661-619_4410453_T 2 14850437 C G 0661-619_4410453_T 2 15135016 C A 0661-619_4410453_T 2 15245664 T C 0661-619_4410453_T 2 15320498 C T 0661-619_4410453_T 2 15357238 A T 0661-619_4410453_T 2 15480382 A T 0661-619_4410453_T 2 15618488 G A 0661-619_4410453_T 2 15769430 G A 0661-619_4410453_T 2 15873768 G A 0661-619_4410453_T 2 16279194 C T 0661-619_4410453_T 2 16311963 G A 0661-619_4410453_T 2 16761714 G A 0661-619_4410453_T 2 17127723 G C 0661-619_4410453_T 2 17473335 T C 0661-619_4410453_T 2 18241096 T A 0661-619_4410453_T 2 18524173 T C 0661-619_4410453_T 2 18744228 A G 0661-619_4410453_T 2 18746977 C A 0661-619_4410453_T 2 19525196 G C 0661-619_4410453_T 2 19858841 C T 0661-619_4410453_T 2 20135460 T C 0661-619_4410453_T 2 20168436 T C 0661-619_4410453_T 2 20503639 C T 0661-619_4410453_T 2 20554706 C A 0661-619_4410453_T 2 20884326 T C 0661-619_4410453_T 2 21548871 G A 0661-619_4410453_T 2 21977247 A T 0661-619_4410453_T 2 22155369 T G 0661-619_4410453_T 2 23073327 G T 0661-619_4410453_T 2 23605500 G A 0661-619_4410453_T 2 23729774 G A 0661-619_4410453_T 2 24331042 T C 0661-619_4410453_T 2 26147816 G A 0661-619_4410453_T 2 26198381 T G 0661-619_4410453_T 2 26509475 T C 0661-619_4410453_T 2 26646293 A C 0661-619_4410453_T 2 26884522 A T 0661-619_4410453_T 2 27531128 A T 0661-619_4410453_T 2 27534283 A C 0661-619_4410453_T 2 27981541 A G 0661-619_4410453_T 2 28111281 G A 0661-619_4410453_T 2 28196306 A G 0661-619_4410453_T 2 28349624 G A 0661-619_4410453_T 2 28907468 A G 0661-619_4410453_T 2 29097646 T C 0661-619_4410453_T 2 29218624 C T 0661-619_4410453_T 2 30891158 G A 0661-619_4410453_T 2 31050126 A G 0661-619_4410453_T 2 31833629 A G 0661-619_4410453_T 2 32070068 A T 0661-619_4410453_T 2 32807932 T A 0661-619_4410453_T 2 33815153 A G 0661-619_4410453_T 2 33980672 A T 0661-619_4410453_T 2 34095498 G A 0661-619_4410453_T 2 34313388 A C 0661-619_4410453_T 2 34322901 G A 0661-619_4410453_T 2 34497039 C A 0661-619_4410453_T 2 34565572 G T 0661-619_4410453_T 2 35923567 C T 0661-619_4410453_T 2 35987000 T G 0661-619_4410453_T 2 36284394 G A 0661-619_4410453_T 2 36341309 G A 0661-619_4410453_T 2 36495480 T A 0661-619_4410453_T 2 36543701 T A 0661-619_4410453_T 2 36801776 A C 0661-619_4410453_T 2 36996432 T C 0661-619_4410453_T 2 37231944 G A 0661-619_4410453_T 2 37238596 A T 0661-619_4410453_T 2 37434053 C T 0661-619_4410453_T 2 38408998 C T 0661-619_4410453_T 2 38462066 A T 0661-619_4410453_T 2 40150068 A G 0661-619_4410453_T 2 40170540 G A 0661-619_4410453_T 2 40910453 G T 0661-619_4410453_T 2 42055689 C A 0661-619_4410453_T 2 42233314 T C 0661-619_4410453_T 2 42409730 T A 0661-619_4410453_T 2 42452246 T A 0661-619_4410453_T 2 42477020 C T 0661-619_4410453_T 2 42524308 T A 0661-619_4410453_T 2 43171807 A T 0661-619_4410453_T 2 43626531 A T 0661-619_4410453_T 2 44244840 C T 0661-619_4410453_T 2 44912640 C T 0661-619_4410453_T 2 44978527 G A 0661-619_4410453_T 2 45025888 C T 0661-619_4410453_T 2 45043528 C T 0661-619_4410453_T 2 45149686 G A 0661-619_4410453_T 2 45312887 T A 0661-619_4410453_T 2 45893360 T C 0661-619_4410453_T 2 46302652 T A 0661-619_4410453_T 2 46849054 T A 0661-619_4410453_T 2 47394964 C T 0661-619_4410453_T 2 47854863 G T 0661-619_4410453_T 2 48653220 C A 0661-619_4410453_T 2 49375615 G C 0661-619_4410453_T 2 49514550 T A 0661-619_4410453_T 2 49749406 G A 0661-619_4410453_T 2 49933160 C A 0661-619_4410453_T 2 50151512 G A 0661-619_4410453_T 2 50233143 T A 0661-619_4410453_T 2 50388331 A G 0661-619_4410453_T 2 50828464 T A 0661-619_4410453_T 2 51048165 A C 0661-619_4410453_T 2 51201366 G A 0661-619_4410453_T 2 51790299 T C 0661-619_4410453_T 2 52501037 C T 0661-619_4410453_T 2 52723970 A T 0661-619_4410453_T 2 53154869 A G 0661-619_4410453_T 2 53332855 A T 0661-619_4410453_T 2 53603482 T G 0661-619_4410453_T 2 53767196 C T 0661-619_4410453_T 2 53926803 T C 0661-619_4410453_T 2 54005854 A T 0661-619_4410453_T 2 54468519 A G 0661-619_4410453_T 2 54476842 T C 0661-619_4410453_T 2 54548236 A G 0661-619_4410453_T 2 55402710 T A 0661-619_4410453_T 2 56615326 G T 0661-619_4410453_T 2 57472462 A C 0661-619_4410453_T 2 58382346 T G 0661-619_4410453_T 2 59139607 A G 0661-619_4410453_T 2 59216091 G A 0661-619_4410453_T 2 59345866 C G 0661-619_4410453_T 2 60436295 T C 0661-619_4410453_T 2 60723355 G T 0661-619_4410453_T 2 61378930 A C 0661-619_4410453_T 2 62100729 C T 0661-619_4410453_T 2 62122445 T C 0661-619_4410453_T 2 62399772 C A 0661-619_4410453_T 2 63113934 T A 0661-619_4410453_T 2 63373580 T A 0661-619_4410453_T 2 64209725 T G 0661-619_4410453_T 2 64253399 G T 0661-619_4410453_T 2 64566816 G A 0661-619_4410453_T 2 65281677 A G 0661-619_4410453_T 2 65422106 T A 0661-619_4410453_T 2 65848946 A T 0661-619_4410453_T 2 65892293 C T 0661-619_4410453_T 2 66442280 A C 0661-619_4410453_T 2 66575387 G C 0661-619_4410453_T 2 66885913 C T 0661-619_4410453_T 2 66923392 C T 0661-619_4410453_T 2 67228107 T G 0661-619_4410453_T 2 67352933 T A 0661-619_4410453_T 2 68159956 A G 0661-619_4410453_T 2 68305259 A T 0661-619_4410453_T 2 68527321 T A 0661-619_4410453_T 2 68797780 C A 0661-619_4410453_T 2 69127764 A C 0661-619_4410453_T 2 69424202 T A 0661-619_4410453_T 2 69873962 C A 0661-619_4410453_T 2 69995025 T A 0661-619_4410453_T 2 70434458 A C 0661-619_4410453_T 2 71015290 T G 0661-619_4410453_T 2 71261051 G A 0661-619_4410453_T 2 71505324 G A 0661-619_4410453_T 2 71754264 A C 0661-619_4410453_T 2 72754790 A T 0661-619_4410453_T 2 73132680 T G 0661-619_4410453_T 2 73132681 C T 0661-619_4410453_T 2 73166130 G A 0661-619_4410453_T 2 73396313 C T 0661-619_4410453_T 2 74891610 C T 0661-619_4410453_T 2 75100591 C T 0661-619_4410453_T 2 75214317 G A 0661-619_4410453_T 2 76589510 T C 0661-619_4410453_T 2 76766391 C A 0661-619_4410453_T 2 76778765 T G 0661-619_4410453_T 2 76783576 T G 0661-619_4410453_T 2 76854948 G A 0661-619_4410453_T 2 76871480 G A 0661-619_4410453_T 2 77684403 G C 0661-619_4410453_T 2 78074144 G A 0661-619_4410453_T 2 78427852 G T 0661-619_4410453_T 2 78697942 G A 0661-619_4410453_T 2 78720716 A C 0661-619_4410453_T 2 78906717 T C 0661-619_4410453_T 2 79116850 A T 0661-619_4410453_T 2 79319197 C T 0661-619_4410453_T 2 79322465 C T 0661-619_4410453_T 2 79410808 G C 0661-619_4410453_T 2 79721070 A T 0661-619_4410453_T 2 79739085 T C 0661-619_4410453_T 2 79739086 C T 0661-619_4410453_T 2 79872323 A G 0661-619_4410453_T 2 80192485 A T 0661-619_4410453_T 2 81155659 C T 0661-619_4410453_T 2 81271589 A G 0661-619_4410453_T 2 81518718 A G 0661-619_4410453_T 2 81795176 C T 0661-619_4410453_T 2 81969821 G A 0661-619_4410453_T 2 82425624 A G 0661-619_4410453_T 2 82530526 T C 0661-619_4410453_T 2 82552693 T G 0661-619_4410453_T 2 82596701 C T 0661-619_4410453_T 2 82729393 G A 0661-619_4410453_T 2 82912194 G T 0661-619_4410453_T 2 83345895 A C 0661-619_4410453_T 2 83471016 G T 0661-619_4410453_T 2 83595531 A G 0661-619_4410453_T 2 83653297 C T 0661-619_4410453_T 2 83734434 T A 0661-619_4410453_T 2 84130734 A G 0661-619_4410453_T 2 85867220 C A 0661-619_4410453_T 2 86714659 A G 0661-619_4410453_T 2 86728516 C G 0661-619_4410453_T 2 86938932 C G 0661-619_4410453_T 2 87035159 C T 0661-619_4410453_T 2 87087352 A G 0661-619_4410453_T 2 87186066 C T 0661-619_4410453_T 2 87190089 T C 0661-619_4410453_T 2 87611002 C A 0661-619_4410453_T 2 87622370 C T 0661-619_4410453_T 2 87732073 A G 0661-619_4410453_T 2 87805599 T C 0661-619_4410453_T 2 87853591 A G 0661-619_4410453_T 2 87873865 C T 0661-619_4410453_T 2 87986379 C T 0661-619_4410453_T 2 88404393 G A 0661-619_4410453_T 2 88712750 G A 0661-619_4410453_T 2 88778907 A G 0661-619_4410453_T 2 88829037 A G 0661-619_4410453_T 2 88829099 G C 0661-619_4410453_T 2 88865092 T A 0661-619_4410453_T 2 88865781 T A 0661-619_4410453_T 2 88942616 A T 0661-619_4410453_T 2 89030264 G C 0661-619_4410453_T 2 89034279 A T 0661-619_4410453_T 2 89186229 G T 0661-619_4410453_T 2 89308998 G A 0661-619_4410453_T 2 89765331 C A 0661-619_4410453_T 2 89774134 T C 0661-619_4410453_T 2 89780862 T C 0661-619_4410453_T 2 89783686 C T 0661-619_4410453_T 2 89783687 T C 0661-619_4410453_T 2 89793257 C A 0661-619_4410453_T 2 89793281 G A 0661-619_4410453_T 2 89842808 T C 0661-619_4410453_T 2 89842824 T C 0661-619_4410453_T 2 89842829 T C 0661-619_4410453_T 2 89842933 A C 0661-619_4410453_T 2 89844472 C T 0661-619_4410453_T 2 89846358 T G 0661-619_4410453_T 2 89847969 C T 0661-619_4410453_T 2 89848035 G A 0661-619_4410453_T 2 89848302 G A 0661-619_4410453_T 2 89848386 T C 0661-619_4410453_T 2 89850956 G A 0661-619_4410453_T 2 89850963 C A 0661-619_4410453_T 2 89850964 A T 0661-619_4410453_T 2 89851133 G C 0661-619_4410453_T 2 89852583 G A 0661-619_4410453_T 2 89852598 A G 0661-619_4410453_T 2 89917406 A C 0661-619_4410453_T 2 90084717 C T 0661-619_4410453_T 2 90266401 C T 0661-619_4410453_T 2 90289834 T C 0661-619_4410453_T 2 90310743 A G 0661-619_4410453_T 2 90311845 A G 0661-619_4410453_T 2 91558449 C T 0661-619_4410453_T 2 91590742 C T 0661-619_4410453_T 2 91590746 A T 0661-619_4410453_T 2 91741603 G A 0661-619_4410453_T 2 91865316 G A 0661-619_4410453_T 2 91880853 C A 0661-619_4410453_T 2 91880901 T C 0661-619_4410453_T 2 91904556 G A 0661-619_4410453_T 2 91933289 C G 0661-619_4410453_T 2 91945899 C T 0661-619_4410453_T 2 91945904 C A 0661-619_4410453_T 2 91962710 T C 0661-619_4410453_T 2 92007970 A T 0661-619_4410453_T 2 92433688 G A 0661-619_4410453_T 2 92623923 T A 0661-619_4410453_T 2 92624466 G A 0661-619_4410453_T 2 93139299 T C 0661-619_4410453_T 2 93174202 C T 0661-619_4410453_T 2 93254541 G T 0661-619_4410453_T 2 93489070 G A 0661-619_4410453_T 2 93489260 C T 0661-619_4410453_T 2 93642335 G T 0661-619_4410453_T 2 94067556 T C 0661-619_4410453_T 2 94087288 C G 0661-619_4410453_T 2 94157647 G T 0661-619_4410453_T 2 94252213 T C 0661-619_4410453_T 2 94825948 A G 0661-619_4410453_T 2 95037253 A C 0661-619_4410453_T 2 95346495 C T 0661-619_4410453_T 2 95723071 T C 0661-619_4410453_T 2 95889906 A C 0661-619_4410453_T 2 96263360 C A 0661-619_4410453_T 2 96537667 G A 0661-619_4410453_T 2 97676451 A G 0661-619_4410453_T 2 97917950 T C 0661-619_4410453_T 2 98135175 C T 0661-619_4410453_T 2 98878426 C T 0661-619_4410453_T 2 99020231 C A 0661-619_4410453_T 2 99207554 T A 0661-619_4410453_T 2 100605682 C T 0661-619_4410453_T 2 101389018 T A 0661-619_4410453_T 2 101678115 G A 0661-619_4410453_T 2 102168798 A G 0661-619_4410453_T 2 102661498 T C 0661-619_4410453_T 2 102768536 A C 0661-619_4410453_T 2 103077037 G T 0661-619_4410453_T 2 103720205 T A 0661-619_4410453_T 2 103753289 A T 0661-619_4410453_T 2 103766516 T C 0661-619_4410453_T 2 103946632 A T 0661-619_4410453_T 2 104033326 T A 0661-619_4410453_T 2 104116451 A C 0661-619_4410453_T 2 104340792 T C 0661-619_4410453_T 2 104587503 A G 0661-619_4410453_T 2 104843875 C T 0661-619_4410453_T 2 104956746 C G 0661-619_4410453_T 2 104979624 G A 0661-619_4410453_T 2 105064835 T C 0661-619_4410453_T 2 105167861 G T 0661-619_4410453_T 2 106183243 A T 0661-619_4410453_T 2 106371326 C T 0661-619_4410453_T 2 106400315 G A 0661-619_4410453_T 2 106442498 A G 0661-619_4410453_T 2 106495334 C A 0661-619_4410453_T 2 106569215 A T 0661-619_4410453_T 2 106907269 G A 0661-619_4410453_T 2 107318323 T G 0661-619_4410453_T 2 107574525 C T 0661-619_4410453_T 2 107827326 C T 0661-619_4410453_T 2 107827338 G T 0661-619_4410453_T 2 108095131 T C 0661-619_4410453_T 2 108353375 A G 0661-619_4410453_T 2 110448641 G A 0661-619_4410453_T 2 111143616 C T 0661-619_4410453_T 2 111181516 A C 0661-619_4410453_T 2 111385544 A G 0661-619_4410453_T 2 111386696 A G 0661-619_4410453_T 2 112290111 A T 0661-619_4410453_T 2 112606671 G A 0661-619_4410453_T 2 112847133 T G 0661-619_4410453_T 2 113427635 C G 0661-619_4410453_T 2 113515809 G T 0661-619_4410453_T 2 113566394 T C 0661-619_4410453_T 2 114907176 T C 0661-619_4410453_T 2 114930962 A T 0661-619_4410453_T 2 114932092 G A 0661-619_4410453_T 2 115033696 C T 0661-619_4410453_T 2 115208205 C T 0661-619_4410453_T 2 115497735 T G 0661-619_4410453_T 2 115522641 C T 0661-619_4410453_T 2 115847384 G A 0661-619_4410453_T 2 116050641 C T 0661-619_4410453_T 2 116387622 T A 0661-619_4410453_T 2 116397930 C T 0661-619_4410453_T 2 116668760 G C 0661-619_4410453_T 2 116807873 C T 0661-619_4410453_T 2 116825019 T G 0661-619_4410453_T 2 116971678 T A 0661-619_4410453_T 2 117191273 A G 0661-619_4410453_T 2 117395571 C T 0661-619_4410453_T 2 117488126 G A 0661-619_4410453_T 2 117680211 G C 0661-619_4410453_T 2 118117202 T G 0661-619_4410453_T 2 118507470 A T 0661-619_4410453_T 2 118798757 A T 0661-619_4410453_T 2 118974025 C A 0661-619_4410453_T 2 119081078 G A 0661-619_4410453_T 2 119147137 G T 0661-619_4410453_T 2 119247370 G A 0661-619_4410453_T 2 119407445 T C 0661-619_4410453_T 2 120331994 T A 0661-619_4410453_T 2 120397120 C A 0661-619_4410453_T 2 120594822 C T 0661-619_4410453_T 2 120693279 G A 0661-619_4410453_T 2 121042705 A C 0661-619_4410453_T 2 121762610 C T 0661-619_4410453_T 2 122369603 A C 0661-619_4410453_T 2 122661935 T A 0661-619_4410453_T 2 122798220 G A 0661-619_4410453_T 2 123072388 G C 0661-619_4410453_T 2 123134238 C G 0661-619_4410453_T 2 123149719 C A 0661-619_4410453_T 2 123512222 G C 0661-619_4410453_T 2 123847712 C A 0661-619_4410453_T 2 123852935 T A 0661-619_4410453_T 2 124302471 G A 0661-619_4410453_T 2 124702530 C T 0661-619_4410453_T 2 124709232 C T 0661-619_4410453_T 2 124885630 T G 0661-619_4410453_T 2 125157605 A G 0661-619_4410453_T 2 125374926 A C 0661-619_4410453_T 2 126095746 C T 0661-619_4410453_T 2 126909287 C T 0661-619_4410453_T 2 127044383 G A 0661-619_4410453_T 2 128290846 T A 0661-619_4410453_T 2 129562151 C T 0661-619_4410453_T 2 129604878 C T 0661-619_4410453_T 2 129655954 T C 0661-619_4410453_T 2 130130282 G C 0661-619_4410453_T 2 130162740 G A 0661-619_4410453_T 2 130215615 G A 0661-619_4410453_T 2 130215642 A G 0661-619_4410453_T 2 130373518 G A 0661-619_4410453_T 2 130641483 G A 0661-619_4410453_T 2 130688538 C T 0661-619_4410453_T 2 131178007 G A 0661-619_4410453_T 2 131276372 A G 0661-619_4410453_T 2 131303674 C T 0661-619_4410453_T 2 131413884 A C 0661-619_4410453_T 2 131455362 T C 0661-619_4410453_T 2 131456789 T C 0661-619_4410453_T 2 131687372 T A 0661-619_4410453_T 2 131791194 C T 0661-619_4410453_T 2 131823370 C G 0661-619_4410453_T 2 131983552 C A 0661-619_4410453_T 2 132225301 T G 0661-619_4410453_T 2 132249960 T C 0661-619_4410453_T 2 132280722 G A 0661-619_4410453_T 2 132351376 T A 0661-619_4410453_T 2 132360640 A G 0661-619_4410453_T 2 132723460 C G 0661-619_4410453_T 2 132787322 C A 0661-619_4410453_T 2 133000717 T A 0661-619_4410453_T 2 133110641 G A 0661-619_4410453_T 2 133421599 T C 0661-619_4410453_T 2 133893655 G A 0661-619_4410453_T 2 134010136 A G 0661-619_4410453_T 2 135033445 T C 0661-619_4410453_T 2 135512640 A T 0661-619_4410453_T 2 135990738 T G 0661-619_4410453_T 2 136828953 C A 0661-619_4410453_T 2 136903924 A T 0661-619_4410453_T 2 137063651 T A 0661-619_4410453_T 2 137063745 C A 0661-619_4410453_T 2 138098833 A C 0661-619_4410453_T 2 138462406 T G 0661-619_4410453_T 2 139020453 T C 0661-619_4410453_T 2 139212397 C T 0661-619_4410453_T 2 139288366 A T 0661-619_4410453_T 2 139311244 T A 0661-619_4410453_T 2 139640824 C T 0661-619_4410453_T 2 139768577 C T 0661-619_4410453_T 2 139770733 T C 0661-619_4410453_T 2 139801403 T C 0661-619_4410453_T 2 140019211 A T 0661-619_4410453_T 2 140098831 T C 0661-619_4410453_T 2 140135609 C T 0661-619_4410453_T 2 140582226 A T 0661-619_4410453_T 2 140743756 G C 0661-619_4410453_T 2 141178958 T C 0661-619_4410453_T 2 141185697 C A 0661-619_4410453_T 2 141220069 C T 0661-619_4410453_T 2 141436499 A C 0661-619_4410453_T 2 141505128 T C 0661-619_4410453_T 2 141575330 C T 0661-619_4410453_T 2 141684507 G A 0661-619_4410453_T 2 141718705 C A 0661-619_4410453_T 2 141886977 T G 0661-619_4410453_T 2 141931238 C G 0661-619_4410453_T 2 142019573 C T 0661-619_4410453_T 2 142220016 A T 0661-619_4410453_T 2 142353848 C G 0661-619_4410453_T 2 142729356 C T 0661-619_4410453_T 2 143047854 T C 0661-619_4410453_T 2 144867749 C T 0661-619_4410453_T 2 144883096 A G 0661-619_4410453_T 2 144963515 T A 0661-619_4410453_T 2 145319296 G T 0661-619_4410453_T 2 145367456 T G 0661-619_4410453_T 2 145960196 C T 0661-619_4410453_T 2 146476877 G T 0661-619_4410453_T 2 148390569 A G 0661-619_4410453_T 2 148815197 C A 0661-619_4410453_T 2 149267285 C T 0661-619_4410453_T 2 149808481 T C 0661-619_4410453_T 2 149853120 C G 0661-619_4410453_T 2 150559203 T A 0661-619_4410453_T 2 151196785 T C 0661-619_4410453_T 2 151258385 A C 0661-619_4410453_T 2 151867175 G A 0661-619_4410453_T 2 151932824 T A 0661-619_4410453_T 2 152780183 T A 0661-619_4410453_T 2 152996286 T C 0661-619_4410453_T 2 152996388 T C 0661-619_4410453_T 2 153293774 T G 0661-619_4410453_T 2 153819680 A C 0661-619_4410453_T 2 154127698 C A 0661-619_4410453_T 2 154178981 C T 0661-619_4410453_T 2 154494149 T G 0661-619_4410453_T 2 154836220 A C 0661-619_4410453_T 2 154876539 C T 0661-619_4410453_T 2 154894727 A G 0661-619_4410453_T 2 154938506 C T 0661-619_4410453_T 2 155233295 G A 0661-619_4410453_T 2 155384815 C T 0661-619_4410453_T 2 155528851 G A 0661-619_4410453_T 2 155528856 C T 0661-619_4410453_T 2 155564875 A T 0661-619_4410453_T 2 155769822 G T 0661-619_4410453_T 2 155873331 A G 0661-619_4410453_T 2 156474870 C T 0661-619_4410453_T 2 156750018 G A 0661-619_4410453_T 2 156750040 G A 0661-619_4410453_T 2 158685344 C T 0661-619_4410453_T 2 159138028 C T 0661-619_4410453_T 2 160029986 C A 0661-619_4410453_T 2 161237042 A G 0661-619_4410453_T 2 161891474 C A 0661-619_4410453_T 2 162121869 A C 0661-619_4410453_T 2 162427059 T G 0661-619_4410453_T 2 162598920 C A 0661-619_4410453_T 2 163142764 A G 0661-619_4410453_T 2 163151168 A G 0661-619_4410453_T 2 163974099 A G 0661-619_4410453_T 2 164582424 A T 0661-619_4410453_T 2 164582425 T A 0661-619_4410453_T 2 165408333 G T 0661-619_4410453_T 2 165514574 C T 0661-619_4410453_T 2 165911461 A C 0661-619_4410453_T 2 166002643 G T 0661-619_4410453_T 2 166538424 C A 0661-619_4410453_T 2 166620233 A G 0661-619_4410453_T 2 167029870 C T 0661-619_4410453_T 2 167049521 C A 0661-619_4410453_T 2 167129869 C A 0661-619_4410453_T 2 168118033 G T 0661-619_4410453_T 2 168380075 G T 0661-619_4410453_T 2 168645116 A T 0661-619_4410453_T 2 169334953 G A 0661-619_4410453_T 2 169504916 T C 0661-619_4410453_T 2 169916571 C T 0661-619_4410453_T 2 170102579 A G 0661-619_4410453_T 2 170693037 A G 0661-619_4410453_T 2 170774567 T C 0661-619_4410453_T 2 170935588 T C 0661-619_4410453_T 2 170972360 A G 0661-619_4410453_T 2 173173870 A G 0661-619_4410453_T 2 173337267 G C 0661-619_4410453_T 2 174009427 C A 0661-619_4410453_T 2 174035410 T G 0661-619_4410453_T 2 174403086 A T 0661-619_4410453_T 2 174701819 A C 0661-619_4410453_T 2 175757975 T G 0661-619_4410453_T 2 175779546 G T 0661-619_4410453_T 2 175791135 C T 0661-619_4410453_T 2 176031545 T C 0661-619_4410453_T 2 177091724 T A 0661-619_4410453_T 2 177349806 G A 0661-619_4410453_T 2 177926705 A G 0661-619_4410453_T 2 178121409 C T 0661-619_4410453_T 2 178868254 A T 0661-619_4410453_T 2 179531844 T C 0661-619_4410453_T 2 179876313 C T 0661-619_4410453_T 2 180594038 T G 0661-619_4410453_T 2 180637211 T C 0661-619_4410453_T 2 181863982 C A 0661-619_4410453_T 2 181951411 A C 0661-619_4410453_T 2 182021508 A G 0661-619_4410453_T 2 182801305 A T 0661-619_4410453_T 2 183194620 C T 0661-619_4410453_T 2 183964675 C A 0661-619_4410453_T 2 184165332 T C 0661-619_4410453_T 2 185036876 A T 0661-619_4410453_T 2 185756585 T G 0661-619_4410453_T 2 186002608 C T 0661-619_4410453_T 2 187049904 T G 0661-619_4410453_T 2 188134259 G A 0661-619_4410453_T 2 188840260 A G 0661-619_4410453_T 2 191173898 T G 0661-619_4410453_T 2 191379943 C T 0661-619_4410453_T 2 191526260 C A 0661-619_4410453_T 2 191588361 C A 0661-619_4410453_T 2 191700142 A T 0661-619_4410453_T 2 191965523 G A 0661-619_4410453_T 2 192030327 T A 0661-619_4410453_T 2 192641948 T G 0661-619_4410453_T 2 193342890 C G 0661-619_4410453_T 2 193478072 T C 0661-619_4410453_T 2 193646568 C A 0661-619_4410453_T 2 194127979 C T 0661-619_4410453_T 2 194768230 C T 0661-619_4410453_T 2 194865932 A C 0661-619_4410453_T 2 194954863 A C 0661-619_4410453_T 2 195351907 T C 0661-619_4410453_T 2 195893129 A T 0661-619_4410453_T 2 196088896 G C 0661-619_4410453_T 2 197106809 T A 0661-619_4410453_T 2 197438974 G A 0661-619_4410453_T 2 197464022 C T 0661-619_4410453_T 2 197539684 A C 0661-619_4410453_T 2 198342524 C T 0661-619_4410453_T 2 198369276 A G 0661-619_4410453_T 2 198543863 A T 0661-619_4410453_T 2 198926944 C T 0661-619_4410453_T 2 199426707 A G 0661-619_4410453_T 2 199899610 A G 0661-619_4410453_T 2 200109399 A C 0661-619_4410453_T 2 200249725 G A 0661-619_4410453_T 2 200683546 C T 0661-619_4410453_T 2 201529337 T C 0661-619_4410453_T 2 201926812 G A 0661-619_4410453_T 2 202136446 T G 0661-619_4410453_T 2 202721036 A T 0661-619_4410453_T 2 204336572 C T 0661-619_4410453_T 2 204517940 G C 0661-619_4410453_T 2 205870796 G A 0661-619_4410453_T 2 205921972 A C 0661-619_4410453_T 2 206386700 A T 0661-619_4410453_T 2 206400530 T C 0661-619_4410453_T 2 206473599 T C 0661-619_4410453_T 2 207002133 C T 0661-619_4410453_T 2 208264206 A C 0661-619_4410453_T 2 208496834 C T 0661-619_4410453_T 2 208976671 A T 0661-619_4410453_T 2 209083249 G T 0661-619_4410453_T 2 209168702 T A 0661-619_4410453_T 2 209168703 T G 0661-619_4410453_T 2 209200258 T C 0661-619_4410453_T 2 209387457 G A 0661-619_4410453_T 2 210065856 G C 0661-619_4410453_T 2 210111299 G T 0661-619_4410453_T 2 211020985 C T 0661-619_4410453_T 2 211315389 A C 0661-619_4410453_T 2 211610994 C T 0661-619_4410453_T 2 212047761 G C 0661-619_4410453_T 2 212240676 A G 0661-619_4410453_T 2 212452011 T G 0661-619_4410453_T 2 212460982 T C 0661-619_4410453_T 2 212591314 C T 0661-619_4410453_T 2 212642957 T C 0661-619_4410453_T 2 213361380 A G 0661-619_4410453_T 2 213848297 A C 0661-619_4410453_T 2 214191728 A G 0661-619_4410453_T 2 215251293 A G 0661-619_4410453_T 2 215611156 C G 0661-619_4410453_T 2 215994391 G A 0661-619_4410453_T 2 215998319 A T 0661-619_4410453_T 2 216147369 A G 0661-619_4410453_T 2 216190791 C T 0661-619_4410453_T 2 217156879 C G 0661-619_4410453_T 2 217457416 G C 0661-619_4410453_T 2 217617370 A C 0661-619_4410453_T 2 217946969 T A 0661-619_4410453_T 2 218192032 G A 0661-619_4410453_T 2 218544408 T A 0661-619_4410453_T 2 218598560 C T 0661-619_4410453_T 2 219208140 G T 0661-619_4410453_T 2 219573592 T C 0661-619_4410453_T 2 219824186 C T 0661-619_4410453_T 2 219872902 A T 0661-619_4410453_T 2 219933799 G A 0661-619_4410453_T 2 220238308 G T 0661-619_4410453_T 2 220884037 G T 0661-619_4410453_T 2 221026757 G A 0661-619_4410453_T 2 221588853 G A 0661-619_4410453_T 2 222181383 C A 0661-619_4410453_T 2 222269485 C T 0661-619_4410453_T 2 222380520 T C 0661-619_4410453_T 2 222816300 C T 0661-619_4410453_T 2 222988814 A G 0661-619_4410453_T 2 223528303 C A 0661-619_4410453_T 2 223978295 C A 0661-619_4410453_T 2 224865855 T A 0661-619_4410453_T 2 224921612 C T 0661-619_4410453_T 2 224923660 C A 0661-619_4410453_T 2 225446252 A C 0661-619_4410453_T 2 225785169 T C 0661-619_4410453_T 2 226229256 A G 0661-619_4410453_T 2 226631911 A C 0661-619_4410453_T 2 227121577 G A 0661-619_4410453_T 2 227386263 C T 0661-619_4410453_T 2 228498200 T A 0661-619_4410453_T 2 228910880 G T 0661-619_4410453_T 2 228963276 C G 0661-619_4410453_T 2 228976294 G T 0661-619_4410453_T 2 229071041 T C 0661-619_4410453_T 2 229102505 C T 0661-619_4410453_T 2 229105281 C T 0661-619_4410453_T 2 229462927 G T 0661-619_4410453_T 2 229564477 G T 0661-619_4410453_T 2 229801373 C G 0661-619_4410453_T 2 229986536 T A 0661-619_4410453_T 2 230130036 A C 0661-619_4410453_T 2 231473642 G C 0661-619_4410453_T 2 231513143 G T 0661-619_4410453_T 2 231826601 G C 0661-619_4410453_T 2 232158307 G A 0661-619_4410453_T 2 232388321 C T 0661-619_4410453_T 2 232408397 A G 0661-619_4410453_T 2 232995325 T C 0661-619_4410453_T 2 233529814 C T 0661-619_4410453_T 2 233726595 T C 0661-619_4410453_T 2 235101872 G A 0661-619_4410453_T 2 236885111 C T 0661-619_4410453_T 2 237177317 T C 0661-619_4410453_T 2 237692108 C G 0661-619_4410453_T 2 238109821 C T 0661-619_4410453_T 2 238578815 T C 0661-619_4410453_T 2 238903100 A G 0661-619_4410453_T 2 238903514 G A 0661-619_4410453_T 2 238935789 A C 0661-619_4410453_T 2 239787755 G A 0661-619_4410453_T 2 239905479 C G 0661-619_4410453_T 2 239905483 G A 0661-619_4410453_T 2 239905501 G A 0661-619_4410453_T 2 239914679 G C 0661-619_4410453_T 2 240128613 G A 0661-619_4410453_T 2 240602634 T G 0661-619_4410453_T 2 240783028 G A 0661-619_4410453_T 2 240796718 C T 0661-619_4410453_T 2 241774647 G T 0661-619_4410453_T 2 241808681 C T 0661-619_4410453_T 2 242009804 A G 0661-619_4410453_T 2 242045333 A T 0661-619_4410453_T 2 242110346 T C 0661-619_4410453_T 2 242110347 G A 0661-619_4410453_T 3 241246 T C 0661-619_4410453_T 3 654237 A G 0661-619_4410453_T 3 683388 A C 0661-619_4410453_T 3 899238 T G 0661-619_4410453_T 3 1124565 T C 0661-619_4410453_T 3 1277360 T C 0661-619_4410453_T 3 1302053 A C 0661-619_4410453_T 3 1912955 C A 0661-619_4410453_T 3 2296804 C A 0661-619_4410453_T 3 2400430 T C 0661-619_4410453_T 3 2473247 A C 0661-619_4410453_T 3 3328981 G T 0661-619_4410453_T 3 3629523 A C 0661-619_4410453_T 3 3720760 A G 0661-619_4410453_T 3 3730161 C A 0661-619_4410453_T 3 4469874 C A 0661-619_4410453_T 3 4552996 G A 0661-619_4410453_T 3 6070065 T G 0661-619_4410453_T 3 6142559 C T 0661-619_4410453_T 3 6655369 G A 0661-619_4410453_T 3 6692705 C A 0661-619_4410453_T 3 6693300 C T 0661-619_4410453_T 3 6943964 T G 0661-619_4410453_T 3 7114127 T G 0661-619_4410453_T 3 7152187 C T 0661-619_4410453_T 3 7319471 C A 0661-619_4410453_T 3 7444722 C A 0661-619_4410453_T 3 7502224 G A 0661-619_4410453_T 3 7524484 A C 0661-619_4410453_T 3 7603942 A C 0661-619_4410453_T 3 7941270 T C 0661-619_4410453_T 3 8136734 G A 0661-619_4410453_T 3 8411861 A G 0661-619_4410453_T 3 8697734 C G 0661-619_4410453_T 3 8697741 C T 0661-619_4410453_T 3 10215415 T A 0661-619_4410453_T 3 10501373 G T 0661-619_4410453_T 3 10586139 C T 0661-619_4410453_T 3 11029413 C A 0661-619_4410453_T 3 11512779 G A 0661-619_4410453_T 3 12296508 T C 0661-619_4410453_T 3 12848595 A T 0661-619_4410453_T 3 12884542 C T 0661-619_4410453_T 3 12978094 G A 0661-619_4410453_T 3 13765485 G A 0661-619_4410453_T 3 14264720 G C 0661-619_4410453_T 3 15514112 T C 0661-619_4410453_T 3 16084507 A T 0661-619_4410453_T 3 16203545 A T 0661-619_4410453_T 3 16401324 A C 0661-619_4410453_T 3 16707998 G A 0661-619_4410453_T 3 16937067 A G 0661-619_4410453_T 3 19070372 T C 0661-619_4410453_T 3 19074615 A T 0661-619_4410453_T 3 19381832 C T 0661-619_4410453_T 3 19596149 G A 0661-619_4410453_T 3 20097240 G A 0661-619_4410453_T 3 20591648 C A 0661-619_4410453_T 3 20595927 C A 0661-619_4410453_T 3 20606223 G A 0661-619_4410453_T 3 20855431 T C 0661-619_4410453_T 3 20943956 A G 0661-619_4410453_T 3 21083175 G T 0661-619_4410453_T 3 21193035 G A 0661-619_4410453_T 3 23284511 A T 0661-619_4410453_T 3 24009017 C T 0661-619_4410453_T 3 24613766 G T 0661-619_4410453_T 3 24664327 T C 0661-619_4410453_T 3 24930327 C T 0661-619_4410453_T 3 24991318 C T 0661-619_4410453_T 3 25157378 G A 0661-619_4410453_T 3 26136412 T C 0661-619_4410453_T 3 26280824 A T 0661-619_4410453_T 3 26309296 C T 0661-619_4410453_T 3 26603630 G A 0661-619_4410453_T 3 27678716 G A 0661-619_4410453_T 3 27784945 T A 0661-619_4410453_T 3 27954782 T C 0661-619_4410453_T 3 28676708 C T 0661-619_44104
Hi Inigo,
Were you able to reproduce the same error using this sample file? Please let me know how to proceed with this sample.
Thanks! Parvathi.
On Wed, Mar 8, 2023 at 12:31 AM Parvathi Kk @.***> wrote:
Hi,
Thanks for your reply. I am attaching variants for one of the samples to this email. I have a few more samples like this. Please let me know if you find any problem in this file.
Thanks Parvathi.
On Thu, Mar 2, 2023 at 10:08 PM Inigo Martincorena < @.***> wrote:
Hi Parvathi,
Thanks for your interest in dndscv. Could you send me a small example dataset that reproduces this error (through this chat or by email)? I have never come across it before.
Best, Inigo
— Reply to this email directly, view it on GitHub https://github.com/im3sanger/dndscv/issues/86#issuecomment-1452174542, or unsubscribe https://github.com/notifications/unsubscribe-auth/ADDGAL2XXWBIOOV5GXKRVGDW2DEJFANCNFSM6AAAAAAVMRWNYA . You are receiving this because you authored the thread.Message ID: @.***>
--
Thanks
Parvathi Sudha.
--
Thanks
Parvathi Sudha.
Hi,
I solved this issue by generating the reference with the genome file used for processing the sample.
Use buildref()
Thanks Parvathi.
I also encountered this problem, and I built the reference data of hg38 by myself, but still the same error occurs。
[1] Loading the environment... [2] Annotating the mutations... [3] Estimating global rates... [4] Running dNdSloc... [5] Running dNdScv... Regression model for substitutions (theta = 1.86). Error in data.frame(gene_name = genemuts$gene_name, n_syn = genemuts$n_syn, : 参数值意味着不同的行数: 19216, 0, 1 In addition: Warning messages: 1: In dndscv(a, refdb = refdb, use_indel_sites = T, min_indels = 1, : Mutations observed in contiguous sites within a sample. Please annotate or remove dinucleotide or complex substitutions for best results. 2: In dndscv(a, refdb = refdb, use_indel_sites = T, min_indels = 1, : Same mutations observed in different sampleIDs. Please verify that these are independent events and remove duplicates otherwise. 3: In model$y == genemuts$n_syn : longer object length is not a multiple of shorter object length
I would like to know why this error occurs and how to fix it.
Hi,
The code I used:
`library("dndscv")
path_cds_table = "./Hg38_cds_mart_export.txt"
path_genome_fasta = "./GRCh38.primary_assembly.genome.fa"
buildref(cdsfile=path_cds_table, genomefile=path_genome_fasta, outfile = "Hg38_output_refcds.rda", excludechrs="MT", useids = T)
all <- read.table(file = "./All_variants.txt", sep ="\t", header = T)
dndsout = dndscv(all, refdb = "Hg38_output_refcds.rda", cv=NULL,max_muts_per_gene_per_sample = Inf, max_coding_muts_per_sample = Inf) ` Thanks! -Parvathi.
Hi Parvathi,
I am running into the same problem as you.
I am curious where you downloaded your "GRCh38.primary_assembly.genome.fa" file.
I have tried using the ensemble hg38 primary assembly (https://ftp.ensembl.org/pub/release-102/fasta/homo_sapiens/dna/Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz), however I run into the issue described in issue #55.
> buildref(cdsfile=path_cds_table, genomefile=path_genome_fasta,
+ outfile = "Hg38.rda", excludechrs="MT", useids = T)
[1/3] Preparing the environment...
[2/3] Building the RefCDS object...
Error in gene_split[[j]] : subscript out of bounds
The suspected reason is due to the presence of padded N's in my reference:
chr1 1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Thanks, Anthony.
Hello,
Please accept my apologies for the silence.
I would like to understand this error better, as you should not need to regenerate the hg38 object. I would recommend using the hg38 RefCDS and covariates objects provided in the dndscv_data package instead.
Anthony, could you send me a small example file of mutations that reproduces the error? I will try to look into this if I can reproduce it.
Many thanks and sorry, Parvathi, for not acting on this sooner, Inigo
PS. I also just noticed that one of the warnings in Parvathi's first message said that the covariates were not recognised. This was due to input the filename for the covariates in the cv argument. Instead you need to load the covariates and input them as a matrix, as in the example below:
load("covariates_hg19_hg38_epigenome_pcawg.rda") # Loads the covs object
dndsout = dndscv(mutations, refdb = "RefCDS_human_GRCh38_GencodeV18_recommended.rda", cv = covs)
Hi Inigo,
Thanks for the quick response. Loading the covariates fixed the Issue!
Appreciate the help!
Hi,
When I use dNdScv, I am getting this error. This happens only for few samples. I couldn't find any issue with the sample file. All the samples has ID, chr, pos, ref and alt. Can you please tell me how to solve this error?
> dndsout_all = dndscv(smm_var, refdb = "RefCDS_human_GRCh38_GencodeV18_recommended.rda", cv = "covariates_hg19_hg38_epigenome_pcawg.rda",max_muts_per_gene_per_sample = Inf, max_coding_muts_per_sample = Inf)
[1] Loading the environment... [2] Annotating the mutations... [3] Estimating global rates... [4] Running dNdSloc... [5] Running dNdScv... Regression model for substitutions (theta = 1.71). Error in data.frame(gene_name = genemuts$gene_name, n_syn = genemuts$n_syn, : arguments imply differing number of rows: 19216, 0, 1 In addition: Warning messages: 1: In data(list = sprintf("covariates_%s", cv), package = "dndscv") : data set ?covariates_covariates_hg19_hg38_epigenome_pcawg.rda? not found 2: In dndscv(smm_var, refdb = "RefCDS_human_GRCh38_GencodeV18_recommended.rda", : Mutations observed in contiguous sites within a sample. Please annotate or remove dinucleotide or complex substitutions for best results. 3: In dndscv(smm_var, refdb = "RefCDS_human_GRCh38_GencodeV18_recommended.rda", : Same mutations observed in different sampleIDs. Please verify that these are independent events and remove duplicates otherwise. 4: In model$y == genemuts$n_syn : longer object length is not a multiple of shorter object lengthThanks Parvathi.