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imagej / imagej-omero

Server- and client-side communication between ImageJ and OMERO
GNU General Public License v2.0
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SVS file #95

Open jburel opened 6 years ago

jburel commented 6 years ago

Trying to open an SVS file. Example file can be found at http://downloads.openmicroscopy.org/images/SVS/

[ERROR] Module threw exception
java.lang.IllegalArgumentException: Dimensions (width=96999 height=45667) are too large
    at java.awt.image.SampleModel.<init>(SampleModel.java:130)
    at java.awt.image.SinglePixelPackedSampleModel.<init>(SinglePixelPackedSampleModel.java:144)
    at java.awt.image.SinglePixelPackedSampleModel.<init>(SinglePixelPackedSampleModel.java:110)
    at java.awt.image.SinglePixelPackedSampleModel.createCompatibleSampleModel(SinglePixelPackedSampleModel.java:219)
    at net.imglib2.display.screenimage.awt.ARGBScreenImage.<init>(ARGBScreenImage.java:91)
    at net.imglib2.display.screenimage.awt.ARGBScreenImage.<init>(ARGBScreenImage.java:68)
    at net.imagej.display.DefaultDatasetView.rebuild(DefaultDatasetView.java:397)
    at net.imagej.display.DefaultImageDisplay.rebuild(DefaultImageDisplay.java:136)
    at net.imagej.display.DefaultImageDisplay.display(DefaultImageDisplay.java:274)
    at org.scijava.display.DefaultDisplayService.createDisplayQuietly(DefaultDisplayService.java:231)
    at org.scijava.display.DefaultDisplayService.createDisplay(DefaultDisplayService.java:213)
    at org.scijava.display.DisplayPostprocessor.handleOutput(DisplayPostprocessor.java:123)
    at org.scijava.display.DisplayPostprocessor.process(DisplayPostprocessor.java:74)
    at org.scijava.module.ModuleRunner.postProcess(ModuleRunner.java:117)
    at org.scijava.module.ModuleRunner.run(ModuleRunner.java:177)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:127)
    at org.scijava.module.ModuleRunner.call(ModuleRunner.java:66)
    at org.scijava.thread.DefaultThreadService$3.call(DefaultThreadService.java:238)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)
ctrueden commented 6 years ago

It's a general limitation of the standard image viewers of IJ1 and IJ2. One solution could be to change the ImageJ2 image display mechanism to use the BigDataViewer, either always by default, or contingently when the plane size is large.