Drag and drop ImageJ2 .czi .zvi files with Bio-Formats

imagej / imagej2

Open scientific N-dimensional image processing :microscope: :sparkler:

https://imagej.net/

BSD 2-Clause "Simplified" License

1.19k stars 333 forks source link

Drag and drop ImageJ2 .czi .zvi files with Bio-Formats #172

Closed cyrilturies closed 5 years ago

cyrilturies commented 7 years ago

Dear all, I noticed that the drag&drop opening in ImageJ2 is not working for .czi and .zvi file-types. I tried from old and fresh installation (IJ 2.0.0-rc-43/1.51p; Java1.8.0_51 [64-bit]), with Bio-Formats 5.5.3 manually installed or by ImageJ Updater. The Bio-Format Importer is functional within the Plugins sub-menu however when trying to drag&drop in ImageJ toolbar:

.zvi file returns a message "File is not in a supported format, a reader plugin is not available, or it was not found".
.czi file returns a text window starting with ZISRAWFILE... and metadata.

Thanks for your help.

stelfrich commented 7 years ago

I noticed that the drag&drop opening in ImageJ2 is not working for .czi and .zvi file-types.

I can confirm that issue with vanilla ImageJ2. Everything works as expected with Fiji.

ctrueden commented 5 years ago

Sorry for never replying to this. There is not enough information here to reproduce, so I'm going to close it. If someone wants to provide a recipe to reproduce with a current ImageJ2 (with or without Fiji included), please feel free to reopen. https://imagej.net/Bug_reporting_best_practices

(As @stelfrich says, Bio-Formats is not available with plain ImageJ2. But there is no easily-accessible plain ImageJ2 download right now. You can use the Maven artifact via various means, but there is no standalone bundle with clean Updater behavior currently.)