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Open scientific N-dimensional image processing :microscope: :sparkler:
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Open file on NeuronJ plugin freezing #185

Open Solanaceae2 opened 6 years ago

Solanaceae2 commented 6 years ago

ImageJ freezes with I try to open a file using the plugin NeuronJ. I can navigate through folders in the load window until I reach a folder that contains image files, then the entire program freezes.

I am running the current, updated version of ImageJ on Windows 10. I have tried toggling "Use JFileChooser to open/save" and "Use file chooser to import sequences" on and off under Edit > Options > Input/Output. I've tried turning "Use SCIFIO when opening files (BETA!)" under Edit > Options > ImageJ2 on and off, but neither of these actions helped. I have also tried system restore to the earliest restore point on my computer (thinking a Windows 10 update was the issue), but no luck.

Has anyone solved this problem or have any suggestions as to how to approach this issue?

Thanks!

imagejan commented 6 years ago

I can't reproduce in an up-to-date Fiji (Java 8) on Windows 10.

Could you please check whether it works for you with a freshly downloaded Fiji, or with a life-line version of Fiji?

Also, what were the exact steps causing the issue? Which image files are present in the folder?

To get more specific help, it would be useful if you paste the output of Plugins > Debug > System Information here.

Solanaceae2 commented 6 years ago

Hi,

I freshly downloaded, Java, Fiji and re-installed the plugin NeuronJ and I am still getting the freezing problem.

The exact steps are: Open Fiji/ImageJ > Plugins > NeuronJ > click the open icon on NeuronJ tool bar > I can navigate through folders until I reach a folder with an image file (.bmp or .jpg) then the entire program freezes.

I'm not sure what you mean, the Plugins menu does not have a debug option, can you describe what I should do?

On Tue, Jan 9, 2018 at 12:12 AM, Jan Eglinger notifications@github.com wrote:

I can't reproduce in an up-to-date Fiji (Java 8) on Windows 10.

Could you please check whether it works for you with a freshly downloaded Fiji, or with a life-line version of Fiji?

Also, what were the exact steps causing the issue? Which image files are present in the folder?

To get more specific help, it would be useful if you paste the output of *Plugins

Debug > System Information* here.

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/imagej/imagej/issues/185#issuecomment-356210481, or mute the thread https://github.com/notifications/unsubscribe-auth/Ahm-RBEG5qZEcimAil3z7AUrlEaIJ8Zoks5tIx9ogaJpZM4RXF2S .

imagejan commented 6 years ago

@Solanaceae2 wrote:

I freshly downloaded, Java, Fiji and re-installed the plugin NeuronJ and I am still getting the freezing problem.

I'm not sure what you mean, the Plugins menu does not have a debug option, can you describe what I should do?

An up-to-date Fiji should contain a Plugins > Debug submenu. You can also find the command using the search bar: type L to activate the search bar, then search for "system info" and you can run the command with the Run button.

screen shot 2018-01-09 at 22 47 29

Hope that helps.

Solanaceae2 commented 6 years ago

Thank you for your response. Yes, I installed NeuronJ by adding the ImageScience update and I found debug > system information with your instructions. This generates about 250 pages of text... should I paste all of that or is there a specific part that would be helpful?

On Tue, Jan 9, 2018 at 1:48 PM, Jan Eglinger notifications@github.com wrote:

@Solanaceae2 https://github.com/solanaceae2 wrote:

I freshly downloaded, Java, Fiji and re-installed the plugin NeuronJ and I am still getting the freezing problem.

I'm not sure what you mean, the Plugins menu does not have a debug option, can you describe what I should do?

An up-to-date Fiji should contain a Plugins > Debug submenu. You can also find the command using the search bar: type L to activate the search bar, then search for "system info" and you can run the command with the Run button.

[image: screen shot 2018-01-09 at 22 47 29] https://user-images.githubusercontent.com/2033938/34744921-229729d6-f58f-11e7-9a55-b63eab015e1a.png

Hope that helps.

— You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub https://github.com/imagej/imagej/issues/185#issuecomment-356425073, or mute the thread https://github.com/notifications/unsubscribe-auth/Ahm-RE8T1IyfSSIRybIJw2o1ZEOE3yggks5tI96ygaJpZM4RXF2S .