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imagej / imagej2

Open scientific N-dimensional image processing :microscope: :sparkler:
https://imagej.net/
BSD 2-Clause "Simplified" License
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Information printing into console when opening images with Bio-Formats #300

Closed etadobson closed 2 years ago

etadobson commented 2 years ago

When opening an image via Bio-Formats (example: images/C3-jw-30min/C3-jw-30min 5_c5.tif) I see the following message in the console window pop up:

[SciJava-79f3d0ea-Thread-3] INFO loci.formats.in.MinimalTiffReader - Reading IFDs
[SciJava-79f3d0ea-Thread-3] INFO loci.formats.in.MinimalTiffReader - Populating metadata
[SciJava-79f3d0ea-Thread-3] INFO loci.formats.in.TiffReader - Checking comment style
[SciJava-79f3d0ea-Thread-3] INFO loci.formats.in.BaseTiffReader - Populating OME metad

In my case, the messages are being emitted to stderr, while on @ctrueden's system they are emitted to stdout.

There is also a corresponding post on the forum regarding this topic.

imagesc-bot commented 2 years ago

This issue has been mentioned on Image.sc Forum. There might be relevant details there:

https://forum.image.sc/t/information-printing-into-console-when-opening-images-with-bio-formats/60494/6

ctrueden commented 2 years ago

The problem is caused by the presence of jars/slf4j-simple-1.7.26.jar. See this reply for details.