I was using BigStitcher from pyimagej on Windows and needed to pass in paths. But, BigStitcher would choke on the paths claiming it can't find files there.
I traced down the issue to pyimagej automatically replacing backslashes with a forward slash. When I removed this, BigStitcher finally worked.
Should this replacement be optional, perhaps guarded behind a switch, like ij1_style!? I ended up replicating the format code and passing in args as a string, without this replacement.
I was using
BigStitcherfrompyimagejon Windows and needed to pass in paths. But,BigStitcherwould choke on the paths claiming it can't find files there.I traced down the issue to
pyimagejautomatically replacing backslashes with a forward slash. When I removed this, BigStitcher finally worked.https://github.com/imagej/pyimagej/blob/17fdca871234d230c8f1b2f70b950beb4a22c779/src/imagej/__init__.py#L712
Should this replacement be optional, perhaps guarded behind a switch, like
ij1_style!? I ended up replicating the format code and passing inargsas a string, without this replacement.