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imatge-upc / 3D-GAN-superresolution

3D super-resolution using Generative Adversarial Networks
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dataset #3

Open ghost opened 6 years ago

ghost commented 6 years ago

Would you please specify the dataset link? I opened the ADNI link that you have given and in the "Data and Sample" section there is MRI image but it has no T1-weighted images.

JianbinGG commented 6 years ago

MPRAGE should be T1w

joellerena commented 5 years ago

I have reviewed ADNI and searched the images in search, advanced search (beta), Weighting T1. uno Referencing ADNI_SCREENING_CLINICAL_FILE_08_02_17.csv I am right?

joellerena commented 5 years ago

It works, thanks.

zahra74 commented 5 years ago

would you please help me that how can i download the dataset of this code????? thanks alot

joellerena commented 5 years ago

With pleasure to help you. I have used the Adni site: http://adni.loni.usc.edu/data-samples/access-data/

Finally I did not find the same images since in the search engine there are countless indicators. I have also written to the authors and found no answers from them.

i1

I managed to use a set of images that meet the indicated characteristics, I attached my final data set, of several tests performed. Of code:

  1. self.data_path = '/imatge/isanchez/projects/neuro/ADNI-Screening-1.5T'
  2. self.batch_size, 256, 256, 184]

One: i2

Two: i3

I hope I can achieve better results than I could. https://drive.google.com/drive/folders/1rKuM0gqH4EldVNZ7g8Cnz6s3gZ47Joxg?usp=sharing

If you have news, I appreciate sharing them.

zahra74 commented 5 years ago

thank for your help i used the images that you put in google drive for running but i have a question what is the difference between T1_brain_extractedBrainExtractionMask.nii.gz and T1_brain_extractedBrainExtractionBrain.nii.gz?

joellerena commented 5 years ago

It is for the skull-stripping processing. Issues : skull-stripping processing https://github.com/imatge-upc/3D-GAN-superresolution/issues

I have attached links to what has been done but the images look blurry. I imagine not being the same images of the article. In the article they mention a skull-stripping process

Page 58 and 59 https://docs.google.com/document/d/1P2amm5s95_re8raEwImmVE0v1HZpIM6A0XOFxly8ohA/edit?usp=sharing

I hope you achieve better results than what I have done.

hiba555 commented 5 years ago

good morning, I want to train the model using Brats dataset nifty format of size 2402040155 how can i do

davidnds98 commented 3 years ago

Hi, where can I get the dataset now? I am looking for a website in ADNI, but I am not sure where should I find the dataset. Is the dataset still exists?

sai36 commented 3 years ago

Hey! The google link shows Error 404. Can you please re-check it? Thanks!