seg_liver_test.py uses testing_volume_3.txt that only has patients from 105 to 130. This also means that seg_liver_ck will only have images of the aforementioned patients (105 to 130).
This poses a problem in compute_3D_bbs_from_gt_liver.py which looks through seg_liver_ck. It looks for all patients since the for loop happens on all patients. This breaks the for-loop around line 145 for patients below 105 since the path doesn't exist.
This causes the code to break and I can't generate a new crops_LiTS_gt. Can you please tell me how your crops_LiTS_gt has all patients?
seg_liver_test.py uses testing_volume_3.txt that only has patients from 105 to 130. This also means that seg_liver_ck will only have images of the aforementioned patients (105 to 130).
This poses a problem in compute_3D_bbs_from_gt_liver.py which looks through seg_liver_ck. It looks for all patients since the for loop happens on all patients. This breaks the for-loop around line 145 for patients below 105 since the path doesn't exist.
This causes the code to break and I can't generate a new crops_LiTS_gt. Can you please tell me how your crops_LiTS_gt has all patients?
Thank you.