I ran into a problem with long sample names that cannot be save into a excel sheet:
Sheetname ATAC_PGCs_10dpf_rep1.dupmarked.filtered must be <= 31 chars at /home/adomingu/R/debian8/3.4/WriteXLS/Perl/WriteXLSX.pl line 254.
The Perl script 'WriteXLSX.pl' failed to run successfully.
*** caught segfault ***
address (nil), cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
/var/spool/slurmd/job164196/slurm_script: line 15: 49670 Segmentation fault Rscript /fsimb/groups/imb-kettinggr/adomingues/projects/PGCs_ATACseq/NGSpipe2go/tools/Peak_Annotation/Peak_Annotation.R peakData=/fsimb/groups/imb-kettinggr/adomingues/projects/PGCs_ATACseq/results/macs2 transcriptType=Bioconductor transcriptDb=TxDb.Drerio.UCSC.danRer10.refGene orgDb=org.Dr.eg.db regionTSS=3000 out=/fsimb/groups/imb-kettinggr/adomingues/projects/PGCs_ATACseq/results/Peak_Annotation
ERROR: Command failed with exit status = 1 :
module load R/3.4.1_debian8 && Rscript /fsimb/groups/imb-kettinggr/adomingues/projects/PGCs_ATACseq/NGSpipe2go/tools/Peak_Annotation/Peak_Annotation.R peakData=/fsimb/groups/imb-kettinggr/adomingues/projects/PGCs_ATACseq/results/macs2 transcriptType=Bioconductor transcriptDb=TxDb.Drerio.UCSC.danRer10.refGene orgDb=org.Dr.eg.db regionTSS=3000 out=/fsimb/groups/imb-kettinggr/adomingues/projects/PGCs_ATACseq/results/Peak_Annotation ;
Should trimming of the sample name (at the end) in case it is too long be added?
Hi all,
I ran into a problem with long sample names that cannot be save into a excel sheet:
Should trimming of the sample name (at the end) in case it is too long be added?