GSvar: add REs to report config

[marc-sturm]

Before this issue:

• [x] decide with REs should be called in short-read and long-read genomes (clear disease association)
• [x] collect/update meta data: cutoffs, repeat-structure, inheritance, disease name(s), HPO-terms

ToDos SR:

• [x] make separate step in megSAP
  • [x] update steps in GSvar.ini
  • [x] re-calulcate for all diagnostic genomes
  • [x] import into NGSD
• [x] add distribution plots to GSvar
  • [x] set outlier cutoffs in NGSD and use in GSvar
  • [x] make distribution plots system-specific
• [x] compare to NGS and FLA lengths
• [x] add RE callset table
  • [x] re-import WGS calls to add callset
  • [x] call WES samples and import
• [x] allow report config for REs
  • [x] add to report HTML
  • [x] add to report XML
  • [ ] correct report configs ("other causal variant > RE" to report config for RE)
  • [ ] - remove 'RE' as as type to report_configuration_other_causal_variant
  • [ ] add causal RE for WES/WGS/lrGS samples to NGSD
• [x] update RE docu of GSvar

ToDos LR:

• [x] update RE catalog
• [x] make separate step in megSAP
  • [x] update steps in GSvar.ini
  • [x] re-calulcate for all diagnostic genomes
  • [x] import into NGSD
  • [x] set statistical cutoff in NGSD

[leonschuetz]

Evaluate tools:

• [ ] PathSTR
• [ ] LongTR