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ngs-bits
Short-read sequencing tools
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Better IGV integration with GSvar
#458
Open
ubuntolog
opened
1 year ago
ubuntolog
commented
1 year ago
[ ] Make use of the "currentGenomePath" port command (will be added in version 2.17.*)
[x] Run port commands outside of the main thread to avoid the "Not responding" messages in GSvar
[x] Add information about a currently running port command to be displayed in GSvar (possibly in the progress bar)
[x] Refactor the code that uses socket connections for IGV
Use different defaults for long-read BAM/CRAM than for short read
short-read uses: viewaspairs, colorBy UNEXPECTED_PAIR
[ ] long-read should use: colorBy STRAND, group PHASE
if possible also: Quick Consensus Mode, hide soft-clipped bases, hide indels < 10bp