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ngs-bits
Short-read sequencing tools
MIT License
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LongReads: Improve GSvar SV filter
#487
Closed
leonschuetz
closed
4 months ago
leonschuetz
commented
10 months ago
[ ] quality of Sniffles is capped to 60 -> adjust threshold
[x] split INFO fields in seperate columns:
[x] GT
[x] supporting reads
[ ] coverage of ref/alt reads
[ ] add filters:
[ ] phasing (type, block)
[x] Support reads
[x] Coverage
[x] AF
[x] Genotype
megSAP/ngs-bits:
[x] add phasing info like SNV/INDELs
NGSDAnnotateSV:
[x] calculate Breakpoint density per processing system
leonschuetz
commented
10 months ago
[x] compHet filter on phasing blocks
leonschuetz
commented
6 months ago
[x] add tests
megSAP/ngs-bits:
NGSDAnnotateSV: