GSvarServer: update SGE status - Githubissues

imgag / ngs-bits

Short-read sequencing tools

MIT License

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GSvarServer: update SGE status #556

Open marc-sturm opened 1 week ago

marc-sturm commented 1 week ago

ToDo:

[x] implement method stub (AC)
- [x] run code in a separate thread
- [x] make sure only one instance is running at a time
- [x] add settings entry 'queue_update_enabled' and perform SGE update only if set to 'true'
- [ ] add settings entry 'megsap_settings_ini' and parse data from megSAP settings file to singleton PipelineSettings singleton:
- megsap_root > [path of megSAP settings] - QString
- data_folder > data_folder - QString
- projects_folder_diagnostic > project_folder['diagnostic'] - QString
- projects_folder_research > project_folder['research'] - QString
- projects_folder_test > project_folder['test'] - QString
- projects_folder_external > project_folder['external'] - QString
- [not in server setting right now ] > queue_email - QString
- [not in server setting right now ] > queues_default - QStringList
- [not in server setting right now ] > queues_research - QStringList
- [not in server setting right now ] > queues_high_priority - QStringList
- [not in server setting right now ] > queues_high_mem - QStringList
[ ] convert code to C++ (MS)
[ ] remove db_update_queue.php from megSAP (MS)

marc-sturm commented 2 days ago

@ubuntolog please implement your two points