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imgag / ngs-bits

Short-read sequencing tools
MIT License
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CnvReferenceCohort: Mean correlation #584

Open leonschuetz opened 4 days ago

leonschuetz commented 4 days ago

Mean correlation calculation fails if one coverage file returns nan for correlation.

leads to pipeline crash since mean correlation will not writen to CNV file and TsvToQC fails: Exception: Input line with more/less than two parts: 'QC:2000114'

Example: 23006a003-PCR5_01 (sample has no reads, so correlation is nan (removed from coverage folder as quick fix))

marc-sturm commented 4 days ago

should be fixed with https://github.com/imgag/ngs-bits/commit/e3e4d6d4ec7f72d51f1d2db2f51a26faa10aa383