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imglib / imglib2-algorithm

Image processing algorithms for ImgLib2
http://imglib2.net/
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Watershed Labeling deprecated #66

Open tischi opened 6 years ago

tischi commented 6 years ago

I was gonna use the Watershed algorithm, but found that one of its inputs, namely Labeling is deprecated. I was wondering what I am supposed to do? Shall I try to use it like it is or wait for a newer version?

hanslovsky commented 6 years ago

Related to #48 and #61

hanslovsky commented 5 years ago

FWIW I have an undocumented seeded watershed implementation in saalfeldlab/label-utilities that is also available on the imagej maven repo.

imagejan commented 5 years ago

@hanslovsky any plans to migrate this into imglib2-algorithm? I think it would be useful to have it there.

hanslovsky commented 5 years ago

Not in the near future, no:

  1. No tests
  2. written in kotlin and would need to be ported to plain Java
  3. would need to add documentation that satisfies imglib2 standards
  4. It is available through the imagej maven repo, so anybody can use it.
ctrueden commented 5 years ago

@imagejan @hanslovsky Maybe we can just wrap it as an op in imagej-ops.