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imglib / imglib2-ij

Translation between ImgLib & ImageJ data structures (both 1.x and 2)
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getVoxels unimplemented in AbstractVirtualStack #27

Closed ctrueden closed 5 years ago

ctrueden commented 5 years ago

Consider this Groovy script:

image = net.imglib2.img.array.ArrayImgs.unsignedBytes(10, 10, 10)
imp = net.imglib2.img.display.imagej.ImageJFunctions.wrap(image, "Image")
ij.IJ.run(imp, "Gaussian Blur 3D...", "x=10 y=2 z=2")

Running it results in the following exception:

java.lang.UnsupportedOperationException
    at net.imglib2.img.display.imagej.AbstractVirtualStack.getVoxels(AbstractVirtualStack.java:351)
    at ij.plugin.GaussianBlur3D.blurZ(GaussianBlur3D.java:72)
    at ij.plugin.GaussianBlur3D.blur(GaussianBlur3D.java:55)
    at ij.plugin.GaussianBlur3D.run(GaussianBlur3D.java:20)
    at ij.IJ.runPlugIn(IJ.java:198)
    at ij.Executer.runCommand(Executer.java:137)
    at ij.Executer.run(Executer.java:66)
    at ij.IJ.run(IJ.java:308)
    at ij.IJ.run(IJ.java:364)
    at ij.IJ$run.call(Unknown Source)
    at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:48)
    at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:113)
    at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:141)
    at Script8.run(Script8.groovy:6)
ctrueden commented 5 years ago

Should be fixed now thanks to #28.