imi-bigpicture / wsidicom

Python package for reading DICOM WSI file sets.
Apache License 2.0
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read_region_,mm() should have option for frame of reference space #27

Closed erikogabrielsson closed 2 years ago

erikogabrielsson commented 2 years ago

read_region_mm() currently maps physical distance to pixels with same origin and orientation as the image pixels. Graphical annotations are often done with the frame of reference as origin, and to get the corresponding region it would be helpful if read_region_mm could (optionally) map to the frame of reference (and orientation).

erikogabrielsson commented 2 years ago

Resolved by #62