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imi-bigpicture / wsidicomizer

Python library for converting WSI files to DICOM
Apache License 2.0
54 stars 7 forks source link

Support for annotations #106

Open bchandarr opened 3 months ago

bchandarr commented 3 months ago

I am exploring options for wsi2dcm conversion and found this library quite good. Nice work. Any plan/timeline for supporting annotations?

erikogabrielsson commented 2 months ago

Hi @bchandarr and thanks for the feedback.

What kind of annotations do you want to convert?

bchandarr commented 2 months ago

@erikogabrielsson like image polygonal ROIs, later realised the values can be independently converted into DCM SR format

erikogabrielsson commented 1 month ago

@bchandarr You could also use the sup-222 Microscopy Bulk Simple Annotations Storage SOP Class implemented by either WsiDicom or HighDicom. For WsiDicom there are some examples of converting from other annotations formats in the tests.