immcantation / presto

pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
https://presto.readthedocs.io
GNU Affero General Public License v3.0
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Check for usearch and muscle in PATH first #17

Closed ssnn-airr closed 7 years ago

ssnn-airr commented 9 years ago

Original report by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).


AssemblePairs and AlignSets should try to look for usearch/muscle in the PATH without requiring an explicit --exec parameter, with --exec defaulting to None.

ssnn-airr commented 7 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).


Added in 9c90566.