Closed ssnn-airr closed 6 years ago
Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).
Okay, I'm going to go with "no" on the --overwrite
argument, but we can add an explicit output file name argument instead (as per -o
in changeo). At the same time, we can do #62 as well as swap things to the simpler interface that doesn't load everything into SeqRecord objects.
Original report by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).
We might want to allow overwrite of the input file and/or explicit specification of the output file name with an optional
--overwrite
argument. We would have to write to a tempfile, then move the tempfile after the task is done, but that shouldn't require much of a change if we tie it to an optional argument.