immcantation / presto

pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
https://presto.readthedocs.io
GNU Affero General Public License v3.0
0 stars 0 forks source link

Add option to rename MaskPrimers output fields #33

Closed ssnn-airr closed 6 years ago

ssnn-airr commented 8 years ago

Original report by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).


It's a common step in workflows to rename the PRIMER field. This should be built into MaskPrimers as an option. May also be worth allowing rename of the BARCODE field.

ssnn-airr commented 6 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).


Testing done. No difference in the output of MaskPrimers-align and MaskPrimers-score between tip and v0.5.6.

ssnn-airr commented 6 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).


Done in 6f327e0, but MaskPrimers needs a lot of testing before closing this.