immcantation / presto

pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
https://presto.readthedocs.io
GNU Affero General Public License v3.0
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Separate required and option arguments in help #37

Closed ssnn-airr closed 7 years ago

ssnn-airr commented 8 years ago

Original report by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).


Can we separate the command line help into option and required sections? And can we get these to show up in the docs from autoprogram? And can we get autoprogram to automatically print the default values for arguments (we may have the pull request this)?

ssnn-airr commented 7 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).


Broken arguments done into topical sections instead.