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immcantation / presto

pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
https://presto.readthedocs.io
GNU Affero General Public License v3.0
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Add select to SplitSeq #39

Closed ssnn-airr closed 7 years ago

ssnn-airr commented 8 years ago

Original report by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

Might be nice to have a select command in SplitSeq to pull out a specific group of sequences by regex search in an annotation (instead of having to use sample or group).

ssnn-airr commented 7 years ago

Commit 3083791 TODO: add the unit testing part.

ssnn-airr commented 7 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

Doesn't seem to work, and a lot of docs are missing. I'm fixing the docs and trying to figure out what's going on right now.

ssnn-airr commented 7 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

Also, this doesn't do regex matches, as implemented. Which is fine, we don't really need that right now.

ssnn-airr commented 7 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

Also allow an input file of values to select.

ssnn-airr commented 7 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

Working as is.