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immcantation / presto

pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
https://presto.readthedocs.io
GNU Affero General Public License v3.0
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Add ParseHeaders mode to copy multiple annotations into one #44

Closed ssnn-airr closed 6 years ago

ssnn-airr commented 7 years ago

Original report by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

Currently, you can copy multiple annotations into a single collapsed annotation via something like:

> ParseHeader.py copy -s file.fastq -f PRIMER BARCODE -k PRCODE PRCODE --act cat cat

This is non-intuitive and would probably be better as a separate command (merge maybe?)

ssnn-airr commented 6 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

Done in 6fb72ab as ParseHeaders-merge.