AlignSets.py fatal error in write() command (with core dump )

immcantation / presto

pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.

https://presto.readthedocs.io

GNU Affero General Public License v3.0

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AlignSets.py fatal error in write() command (with core dump ) #5

Closed ssnn-airr closed 9 years ago

ssnn-airr commented 9 years ago

Original report by Anonymous.

Here's the relevant part of the traceback from python (not sure what the issues is with my input file)

sys.stderr.write('Error processing sequence set with ID: %.\n' % data.id) ValueError: unsupported format character ' ' (0xa) at index 41

in case you want it, dumped core posted to: s3://AbVitro_Kleinstein_shared/debug/AlignSets-muscle.ST-20150204.core

ssnn-airr commented 9 years ago

Original comment by Anonymous.

dos2unix'ed and rerun , no errors.

ssnn-airr commented 9 years ago

Original comment by Anonymous.

also javh fixed error message with commit 040e374