Closed ssnn-airr closed 7 years ago
Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).
@ruoyijiangyale is that you making issues without logging in? :P
IIRC, vsearch has never supported usearch_local
. I don't think we can work around that. The solution I went with was to implement blastn support for those tools that needed local alignment.
Original report by Anonymous.
presto.Applications.runUBlast -vsearch v2.4.2 no longer supports usearch_local (but there is usearch_global) -see https://github.com/torognes/vsearch/issues/206 for this vsearch bug which means that giving vsearch sequences with '-' will result in stder