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immcantation / presto

pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.

https://presto.readthedocs.io

GNU Affero General Public License v3.0

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Add more details to UnifyHeaders log #58

Closed ssnn-airr closed 6 years ago

ssnn-airr commented 6 years ago

Original report by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

We could use a way to count how many reassignments or deletions occurred from the log files. Something like adding the majority frequency to each log record, number of samples in each UMI group, etc.

ssnn-airr commented 6 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

Added the follow to the consensus mode log in 0ed0d5f:

VALUES - unique set of sample id.
COUNTS - count of sample ids in each set.
CONSFREQ = consensus sample id fequency

Added the following to delete mode:

VALUES - unique set of sample id.