search

immcantation / presto

pRESTO is part of the Immcantation analysis framework for Adaptive Immune Receptor Repertoire sequencing (AIRR-seq). pRESTO is a bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
https://presto.readthedocs.io
GNU Affero General Public License v3.0
0 stars 0 forks source link

UnifyHeaders consensus Log #59

Closed ssnn-airr closed 6 years ago

ssnn-airr commented 6 years ago

Original report by Roy Jiang (Bitbucket: ruoyijiangyale, ).

UnifyHeaders consensus currently outputs a log that looks like this.

#!bash

       ID> 1,45861
 SEQCOUNT> 14
 SAMPLE-1> IBM2
 SAMPLE-2> IBM2
 SAMPLE-3> PM3
 SAMPLE-4> IBM2
 SAMPLE-5> IBM2
 SAMPLE-6> IBM2
 SAMPLE-7> IBM2
 SAMPLE-8> PM3
 SAMPLE-9> IBM2
SAMPLE-10> IBM2
SAMPLE-11> IBM2
SAMPLE-12> IBM2
SAMPLE-13> IBM2
SAMPLE-14> IBM2
CONSENSUS> IBM2

Can we get rid of the "SAMPLE-18" label and just call it "SAMPLE"? I assume this would allow ParseLog to output a table with SAMPLE as a column?

ssnn-airr commented 6 years ago

Original comment by Jason Vander Heiden (Bitbucket: javh, GitHub: javh).

The log doesn't look like this anymore. See #58.